View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1622_low_17 (Length: 275)

Name: NF1622_low_17

Description: NF1622

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1622_low_17

[»] chr5 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 88; E-Value: 2e-42

Query Start/End: Original strand, 101 - 262

Target Start/End: Complemental strand, 14272369 - 14272200

Alignment:

Q	101	gtcactaatttggaaaaggatttcataatttttctctca-------tcgttcttttgctatgtttgttggaattgnnnnnnnn-gccgtttgcacataag	192	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14272369	gtcactactttggaaaaggatttcataatttttctctcaattattctcgttcttttgctgtgtttgttggaattgaaaaaaaaagccgtttgcacataag	14272270	T

Q	193	ctacaatctctagaatttagcttttgcgttaaaatttgtctcagaagatgtgtttaaacgtgattcttga	262	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14272269	ctacaatctctagaatttagcttttgcgctaaaatttgtattggaagatgtgtttaaacgtgattcttga	14272200	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 30; E-Value: 0.00000009

Query Start/End: Original strand, 177 - 262

Target Start/End: Original strand, 25414826 - 25414911

Alignment:

Q	177	gccgtttgcacataagctacaatctctagaatttagcttttgcgttaaaatttgtctcagaagatgtgtttaaacgtgattcttga	262	Q
		\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25414826	gccgtttgcatagaagctacaatatgtagaattcagtttttgctttaaaatttgcattgaaaaatgtgtttcaacgtgattcttga	25414911	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]