View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1622_low_2 (Length: 708)

Name: NF1622_low_2
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1622_low_2
NF1622_low_2
[»] chr3 (1 HSPs)
chr3 (1-693)||(1573070-1573763)


Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Complemental strand, 1573763 - 1573070
Alignment:
Q  1 ctcagtcttaagctttctacttcttctactggccattgaagcaaattagttccagtcttctgatcaaaaagcactgttcttggaattgtctgaagnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  1573763 ctcagtcttaagctttctacttcttctactggccattgaagcaaattagttccagtcttctgatcaaaaagcactgttcttggaattgtctgaagaaaaa 1573664  T
Q  101 nnt-gtgtacaagattttatgaattgctctatccaacattttgcaatgcatttcagctttggcaaattgatgtaatttcagcatgttatgtataatacat 199  Q
      | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1573663 aattgtgtacaaggttttatgaattgctctatcaaacattttgcaatgcatttcagctttggcaaattgatgtaatttcagtatgttatgtataatacat 1573564  T
Q  200 acctgaagagatgcccaacctttttccaagtcatcactttcagcatcagtctcattaatccatccccacaaaatccttcnnnnnnncacttgatcataga 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  1573563 acctgaagagatgcccaacctttttccaagtcatcactttcagcatcagtctcattaatccatccccacaaaatccttctttttttcacttgatcataga 1573464  T
Q  300 aagtctttgaagcatagtatattccatagtccaaaagcaacccaatacccacgtcctcaagtgggttatcaggaatccatgtatcattttcaataaaata 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1573463 aagtctttgaagcatagtatattccatagtccaaaagcaacccaatacccacatcctcaagtgggttatcaggaatccatgtatcattttcaataaaata 1573364  T
Q  400 agtcccaattgcataactatccactcttgtatcatccaaactagcctttaacacatgcttaacatgtggtccatttactgatgtgtccaaaccatttgac 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1573363 agtcccaattgcataactatccactcttgtatcatccaaactagcctttaacacatgcttaacatgtggtccatttactgatgtgtccaaaccatttgac 1573264  T
Q  500 ccgtttattgaaaccgggtaaaagtccacacattcccacatacccgtacccggaaccgcatgtaagtagttatcatttagttcaaaatttataaaatttg 599  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1573263 ccgtttatagaaaccgggtaaaaatccacacattcccacatacccgtacccggaaccgcatgtaagtagttatcatttagttcaaaatttataaaatttg 1573164  T
Q  600 tggttttgtaaaccaatgaaagacctgtttgtcctttctttgatccaattaggactctccattttccatctggcccgatccaaccggtggttgg 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1573163 tggttttgtaaaccaatgaaagacctgtttgtcctttctttgatccaattaggactctccattttccatctggcccgatccaaccagtggttgg 1573070  T

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