View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1622_low_20 (Length: 238)
Name: NF1622_low_20
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_low_20 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11028368 - 11028150
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11028368 |
aaatatatatttttcgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
11028269 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattgatagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaagttgtcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11028268 |
tggtgaatcctaccaatggtagcaatttcattgatagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaagttgtcc |
11028169 |
T |
|
| Q |
201 |
tttgaaaacagacccataa |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11028168 |
tttgaaaacagacccataa |
11028150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 10914938 - 10915163
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||| || ||| ||||||||| | |
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|
| T |
10914938 |
aaatatgtatttttcgagtgatccatttggcatgaattcatatataagaacacgttttgaaccctccacacaaaaaccaataaggtgtgccacattaaca |
10915037 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaa |
193 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||||| |||||| |||||||| ||||||||||||||| ||||||||||| | ||| || ||| |
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|
| T |
10915038 |
tggtgaatcctaccgatggtgacaacttcattgataaaatcttgaccgttggacttggctttgtccaataatttaactgctacaagacgaccactttgaa |
10915137 |
T |
|
| Q |
194 |
gttgtcctttgaaaacagacccataa |
219 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
10915138 |
gttgtcctttgaaaacagatccataa |
10915163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 11008077 - 11008302
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||||||||||||||| ||| || |||||||||| |||||| | ||||||||||||||||||||||||| | |
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|
| T |
11008077 |
aaatatgtatttttctagtgatccatttggcataaattcatatatcagaacacgttttgaaccttccacacagaaaccaatgagttgtaccacattaaca |
11008176 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattga-------tagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaa |
193 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | || ||| |||||||| ||||||||||||| ||||||||||| | ||| |||||| |
|
|
| T |
11008177 |
tggtgaatcctaccaatggtagcaacttcattgacaaaatctcgatcgttggacttggcactgtccaataatttgactgctacaagacgaccacttcgaa |
11008276 |
T |
|
| Q |
194 |
gttgtcctttgaaaacagacccataa |
219 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
11008277 |
gttgtcctttgaaaacagatccataa |
11008302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 11011239 - 11011463
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||| ||||||||||||||| || |||||||||| |||||| ||||||||||||| || |||||||||| | |
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|
| T |
11011239 |
aaatatgtatttttcaagtgatccatttggcatgaattcatatataagaacacgttttgaaccttccacacaaaaaccaatgagctgcaccacattaaca |
11011338 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattga-------tagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaa |
193 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| | || | |||||||| ||||||||||||||| ||||||||||| | ||| |||||| |
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|
| T |
11011339 |
tggtgaatcctaccaatggtagcaacttcattgacaaaatcttgatcactggacttggctttgtccaataatttgactgctacaagacgaccacttcgaa |
11011438 |
T |
|
| Q |
194 |
gttgtcctttgaaaacagacccata |
218 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
11011439 |
gttgtcctttgaaaacagatccata |
11011463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 11033530 - 11033755
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||||||||||||||| ||| || |||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
11033530 |
aaatatgtatttttcgagtgatccatttggcataaattcatatatcagaacacgttttgaaccttccacacaaaaaccaatgagttgtaccacattaaca |
11033629 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattga-------tagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaa |
193 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| | || ||| |||||||| | | ||||||||||| |||||||| || | ||| |||||| |
|
|
| T |
11033630 |
tggtggatcctaccaatggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaa |
11033729 |
T |
|
| Q |
194 |
gttgtcctttgaaaacagacccataa |
219 |
Q |
| |
|
|||||||||| ||||| || |||||| |
|
|
| T |
11033730 |
gttgtcctttaaaaacggatccataa |
11033755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 11004783 - 11004566
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| | | |
|
|
| T |
11004783 |
aaatatgtatttttccagtgatccatttggcatgaattcatatataagagcacgttttgaaccctccacacaaaatccaatgagttgtaccacattgaca |
11004684 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattga-------tagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaa |
193 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | |||||| || ||||| ||||||||||||||| || |||||||| | || |||||| |
|
|
| T |
11004683 |
tggtgaatcctaccaatggtagtaacttcattgacaaaatcttgaccgttggtcttggctttgtccaataatttgaccgctacaagacgatcacttcgaa |
11004584 |
T |
|
| Q |
194 |
gttgtcctttgaaaacag |
211 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
11004583 |
gttttcctttaaaaacag |
11004566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 10983863 - 10984080
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||| ||||||| ||| | ||||||||||| ||||||||||||||| || |||||||||||||||| |||||||||| || ||||||||||||| | |
|
|
| T |
10983863 |
aaatatgtatttttccagtgacccatttggcatgaattcatatataagaacacgttttgaaccctccacgcaaaaaccaataaggtgtaccacattaaca |
10983962 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattga-------tagaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaa |
193 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| | |||| | |||||||| ||||||||||||||| ||||||||||| || || |||| | |
|
|
| T |
10983963 |
tggtgaatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgta |
10984062 |
T |
|
| Q |
194 |
gttgtcctttgaaaacag |
211 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
10984063 |
gttgtcctttaaaaacag |
10984080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 10903775 - 10903999
Alignment:
| Q |
1 |
aaatatatattttttgagtaatccatttggcataaattcatatataagagcatgttttgaaccctccacataaaaaccaatgagttgtaccacattaaga |
100 |
Q |
| |
|
|||||| ||||||| ||| | ||||||||||| ||||||||||| |||||| | ||||| || |||||| |||| ||||| |||||||||||||||| |
|
|
| T |
10903775 |
aaatatgtatttttcaagtgacccatttggcatgaattcatatattagagcacgctttgacccatccacacaaaatccaataagttgtaccacattaacg |
10903874 |
T |
|
| Q |
101 |
tggtgaatcctaccaatggtagcaatttcattgata-------gaccgtcggacttggttttgtccaataattttactgctacaagtcagccatttcgaa |
193 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| |||| | ||| |||| ||||||||||||||| || ||| |||| | ||| |||||| |
|
|
| T |
10903875 |
tggtgaatcctaccgatggtagcaacttcattgataaaatcttgaccattggatttggctttgtccaataatttcaccgctgcaagacgaccacttcgaa |
10903974 |
T |
|
| Q |
194 |
gttgtcctttgaaaacagacccata |
218 |
Q |
| |
|
||||||||||| | ||||| ||||| |
|
|
| T |
10903975 |
gttgtcctttgtagacagagccata |
10903999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 9464535 - 9464598
Alignment:
| Q |
72 |
aaaaaccaatgagttgtaccacattaagatggtgaatcctaccaatggtagcaatttcattgat |
135 |
Q |
| |
|
|||| ||||| || || |||||||||| |||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
9464535 |
aaaagccaattaggtgaaccacattaacatggtgaatcgttccaatggtagcaacttcattgat |
9464598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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