View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1622_low_3 (Length: 666)

Name: NF1622_low_3
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1622_low_3
NF1622_low_3
[»] chr2 (1 HSPs)
chr2 (17-657)||(525468-526113)


Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 17 - 657
Target Start/End: Original strand, 525468 - 526113
Alignment:
Q  17 aacatcagaagtagggtaagcaacacatgtaagaacccaaccttcttcaatctgatcatcatcaaggaaagaaccatctgactgatcaactgcaccagca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  525468 aacatcagaagtagggtaagcaacacatgtaagaacccaaccttcttcaatctgatcatcatcaaggaaagaaccatctgactgatcaactgcaccagca 525567  T
Q  117 gcaactttgccagcacatgaagaacaagaaccagctctgcatgagtatggaaggtcaataccaacttcctcagcatggtcaagaatgtaaacatcacttg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  525568 gcaactttgccagcacatgaagaacaagaaccagctctgcatgagtatggaaggtcaataccaacttcctcagcatggtcaagaatgtaaacatcacttg 525667  T
Q  217 gacaatcaaattcttgagttccttctggtgtaacaagcttcaccttgtaagtagccattgcaactgcaagatcaccacgctttcctgttttactttttaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  525668 gacaatcaaattcttgagttccttctggtgtaacaagcttcaccttgtaagtagccattgcaactgcaagatcaccacgctttcctgttttactttttaa 525767  T
Q  317 accaaaaccgctgggaaaagcctttgtggtggtgctgattgacactggcattggctgcctcctaaggaaggaggtgctcactgcagttccatacaaagca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  525768 accaaaaccgctgggaaaagcctttgtggtggtgctgattgacactggcattggctgcctcctaaggaaggaggtgctcactgcagttccatacaaagca 525867  T
Q  417 ggtgtagttgccattactattatttcttcttctactac-----nnnnnnnggtttctaaggcaaattaacactgctctgtgttgttgataaataagatag 511  Q
    ||||| ||||||||||||||||||||||||||| || |            ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  525868 ggtgtggttgccattactattatttcttcttcttcttcttctacttttttggtttctaaggcaaattaacactgctctgtgttgttgataaataagatag 525967  T
Q  512 ataggggaatgaatgaataataaaggagcttgtggaaaaagtgtggttacaacgagctgctatttcaactccatgcaaccctatctaccacgtggcattc 611  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  525968 ataggggaatgaatgaataataaaggagcttgtgtaaaaagtgtggttacaacgagctgctatttcaactccatgcaaccctatctaccacgtggcattc 526067  T
Q  612 atttatgcctcactctatctatctctctttaacaccacatattctt 657  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  526068 atttatgcctcactctatctatctctctttaacaccacacattctt 526113  T

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