View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1622_low_5 (Length: 504)

Name: NF1622_low_5
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1622_low_5
NF1622_low_5
[»] scaffold0256 (3 HSPs)
scaffold0256 (125-316)||(10295-10485)
scaffold0256 (29-128)||(10169-10268)
scaffold0256 (350-444)||(10534-10628)
[»] scaffold0133 (4 HSPs)
scaffold0133 (123-352)||(9673-9906)
scaffold0133 (123-453)||(14012-14335)
scaffold0133 (2-129)||(9522-9649)
scaffold0133 (2-97)||(13870-13965)
[»] chr6 (5 HSPs)
chr6 (2-130)||(16782120-16782248)
chr6 (213-305)||(16782917-16783010)
chr6 (214-283)||(16875996-16876065)
chr6 (123-181)||(16659176-16659233)
chr6 (128-181)||(16661196-16661248)
[»] chr3 (3 HSPs)
chr3 (1-120)||(38938385-38938503)
chr3 (159-217)||(38938275-38938333)
chr3 (385-431)||(38942398-38942444)
[»] chr5 (2 HSPs)
chr5 (126-217)||(11982848-11982938)
chr5 (1-47)||(11983122-11983168)


Alignment Details
Target: scaffold0256 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 125 - 316
Target Start/End: Original strand, 10295 - 10485
Alignment:
Q  125 aaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttcttgt 224  Q
    ||||||||||||||||||  ||||||| |||||  |||| |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  10295 aaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaaaaaaattggaaaacttatcttatgtaacaacatcatgcccgttcatttgttcttgt 10394  T
Q  225 gtggcctagatttcatcagagagaatccaataccaaataattgtaatactaattatttaatatttcaagttggcaagtgtacctgaagtgca 316  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  10395 gtggcctagatttcatcaaagagaatccaataccatataattgtaatactaattatttaatatttcaagttggc-agtgtacctcaagtgca 10485  T

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Target: scaffold0256; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 10169 - 10268
Alignment:
Q  29 ggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaacatgtcaaaattggctgctatggaaaa 128  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||    
T  10169 ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatagaaaa 10268  T

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Target: scaffold0256; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 350 - 444
Target Start/End: Original strand, 10534 - 10628
Alignment:
Q  350 caactgtatctatcatgttactttcatgcactattgtttatctcaaaataataggtatcctttctcggtgtctttctttaatactctagagagaa 444  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||    
T  10534 caactatatctattatgttactttcatgcactattgtttatctcaaaataataggtatcctttcttggcgtctttctttaatactctagacagaa 10628  T

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Target: scaffold0133 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 123 - 352
Target Start/End: Original strand, 9673 - 9906
Alignment:
Q  123 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttctt 222  Q
    |||||||||||||  |||||  ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9673 ggaaaaaacaagtgttgaaggcacatggccatgaaagggaaaaaaacaaaattggaaaacttatcttatgaaacaacatcatgctcgttcatttgttctt 9772  T
Q  223 gtgtggcctagatttcatcagagagaatccaataccaaataattgtaatacta---attatttaatatttcaagttggcaagtgtacctgaagtgca--c 317  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||       
T  9773 gtgtggcctagatttcatcaaagaaaatccaataccaaataattgtaatactaattattatttaatatttcaagttggc-agtgtacctgaagtgcaagt 9871  T
Q  318 tgtccaagtatggtgtggtggcatcaagttggcaa 352  Q
     |  ||||||||||| | |||||||||||||||||    
T  9872 ggatcaagtatggtgggatggcatcaagttggcaa 9906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 123 - 453
Target Start/End: Original strand, 14012 - 14335
Alignment:
Q  123 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttctt 222  Q
    ||||||||||||||||||||  ||||||| |||||  |||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  14012 ggaaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaacaaaattggaaaacttatcatatgaaacaacatcatgaccgttcatttgttctt 14111  T
Q  223 gtgtggcctagatttcatcagagagaatccaataccaaataattgtaatacta---attatttaatatttcaagttggcaagtgtacctgaagtgca--c 317  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||       
T  14112 gtgtggcctagatttcgtcaaagagaatccaataccaaataattgtaatactaattattatttaatatttcaagttggc-agtgtacctgaagtgcaagt 14210  T
Q  318 tgtccaagtatggtgtggtggcatcaagttggcaactgtatctatcatgttactttcatgcactattgt-ttatctcaaaataataggtatcctttctcg 416  Q
     |  ||||||||||| | ||| ||||||||||||| ||||          || |||   ||  | | || |||||||||||||||||||||||||||| |    
T  14211 ggatcaagtatggtgggatggtatcaagttggcaagtgta----------taattt--agctgtttggtgttatctcaaaataataggtatcctttcttg 14298  T
Q  417 gtgtctttctttaatactctagagagaacttcaactt 453  Q
    | ||||||||||||||||||||| ||||| |||||||    
T  14299 gcgtctttctttaatactctagacagaacctcaactt 14335  T

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Target: scaffold0133; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 9522 - 9649
Alignment:
Q  2 gtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaa 101  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  9522 gtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaa 9621  T
Q  102 catgtcaaaattggctgctatggaaaaa 129  Q
    ||||||||||||||||||||| ||||||    
T  9622 catgtcaaaattggctgctatagaaaaa 9649  T

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Target: scaffold0133; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 13870 - 13965
Alignment:
Q  2 gtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttct 97  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||    
T  13870 gtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttct 13965  T

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Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 16782120 - 16782248
Alignment:
Q  2 gtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaa 101  Q
    |||| |||| |||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||| ||||||||    
T  16782120 gtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgtagtttttctgcaa 16782219  T
Q  102 catgtcaaaattggctgctatggaaaaaa 130  Q
    | ||| || ||||| |||||| |||||||    
T  16782220 cttgtgaatattggttgctatagaaaaaa 16782248  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 16782917 - 16783010
Alignment:
Q  213 atttgttcttgtgtggcctagatttcatcagagagaatccaataccaaataattgtaatactaattattta-atatttcaagttggcaagtgta 305  Q
    ||||||||| | ||| |||||| |||| ||||||||||||| |  |||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  16782917 atttgttctagggtgacctagacttcaccagagagaatccagtcacaaataatagtaatactaattatttatatatttcaagttgggaagtgta 16783010  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 16876065 - 16875996
Alignment:
Q  214 tttgttcttgtgtggcctagatttcatcagagagaatccaataccaaataattgtaatactaattattta 283  Q
    |||||||||||||||||||||||||| | ||||||||||| |  ||||||||  ||||||||||||||||    
T  16876065 tttgttcttgtgtggcctagatttcaccggagagaatccagtcacaaataatattaatactaattattta 16875996  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 16659176 - 16659233
Alignment:
Q  123 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaa 181  Q
    |||||||||| ||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  16659176 ggaaaaaacatgttgttaaggtacatggcaatgaaggggaa-aaaacaaatttggaaaa 16659233  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 16661196 - 16661248
Alignment:
Q  128 aaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaa 181  Q
    ||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  16661196 aaacatgttgtgaaggtacatggcaatgaaggggaa-aaaataaaattggaaaa 16661248  T

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Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 38938503 - 38938385
Alignment:
Q  1 ggtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgca 100  Q
    ||||||||||||||||| ||||| ||||||||||||||||||| || || |||| |||||||||||| | |||||||||| |||||||||||||||||||    
T  38938503 ggtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgca 38938405  T
Q  101 acatgtcaaaattggctgct 120  Q
    || |||||| ||||||||||    
T  38938404 acttgtcaatattggctgct 38938385  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 38938333 - 38938275
Alignment:
Q  159 gggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg 217  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38938333 gggaaaaaaacaaaattggaaaacttatcatatgaaacaacatcatgtccattcatttg 38938275  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 431
Target Start/End: Complemental strand, 38942444 - 38942398
Alignment:
Q  385 gtttatctcaaaataataggtatcctttctcggtgtctttctttaat 431  Q
    |||||| |||||||| || ||||||||||| ||||||||||||||||    
T  38942444 gtttatatcaaaatattaagtatcctttcttggtgtctttctttaat 38942398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 11982938 - 11982848
Alignment:
Q  126 aaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg 217  Q
    ||||||||||||  ||| |||||| ||||||||||||| |||||||||||||||||||||||   | ||||||||||||| |||||||||||    
T  11982938 aaaaacaagttggtaaggtacatgacaatgaaggggaa-aaaacaaaattggaaaacttatcaattcaaacaacatcatgtccattcatttg 11982848  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11983168 - 11983122
Alignment:
Q  1 ggtttggattggagatgactttggtctaggaagatgaaatatgcgtt 47  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  11983168 ggtttggattggagatgactttgctctatgaagatgaaatatgcgtt 11983122  T

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