View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1622_low_9 (Length: 400)
Name: NF1622_low_9
Description: NF1622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1622_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 203 - 381
Target Start/End: Complemental strand, 36947600 - 36947422
Alignment:
| Q |
203 |
atctgcaggctaggccctctgagagactagaagacatcgctttaaaatttttgcaatacaaggtggcagtagttgctattatgcattcttcttccgaggg |
302 |
Q |
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| T |
36947600 |
atctgcaggctaggccctctgagagactagaagacatcgttttaaaatttttgcaatacaaggtggcagtagttgctattatgcattcttcttccgaggg |
36947501 |
T |
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| Q |
303 |
cgggtcaactcctcagctgctacatatgacttctcgctcagaaataataaaatgtaagctttcacatttattggcaatg |
381 |
Q |
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| T |
36947500 |
cgggtcaactcctcagctgctacatatgacttctccctcagaaataataaaatgtaagctttcacatttattggcaatg |
36947422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 36947802 - 36947654
Alignment:
| Q |
1 |
tttagcagcatgcatagagagaaaattacagcaatgtggaactgatagtaatgggaaaacatatccttcgagttttgttgatgtaagctctttaacactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
36947802 |
tttagcagcatgcatagagagaaaattacagcaatgtggaactgatagtaatgggaaaacatatccttggagttttgttgatgtaagctcctcaacactt |
36947703 |
T |
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| Q |
101 |
gtgcgaaattttttgcgtatcaaatcaatttcccaatttcgcgtagaaa |
149 |
Q |
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| T |
36947702 |
gttagaaattttttgctcatcaaatcaatttcccaattttgcgtagaaa |
36947654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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