View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623-INSERTION-1 (Length: 634)
Name: NF1623-INSERTION-1
Description: NF1623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623-INSERTION-1 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: scaffold0252 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Original strand, 11632 - 12245
Alignment:
| Q |
7 |
agattgatggtaatgttttgaacttaaagccttctttgttttctattgacaaaaagggaaatggtggcaccaaaattagtaccttgagtcctttcactaa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11632 |
agattgatggtaatgttttgaacttaaagccttctttgttttctattgacaaaaagggaaatggtggcaccaaaattagtaccttgagtcctttcactaa |
11731 |
T |
|
| Q |
107 |
attgcaaaattctgtctacaaaccctttattcgcgattttctcaagaaggcttcggatagaaaactgaagagagtggaatcagtggcatcatttgacgca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| |
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| T |
11732 |
attgcaaaattctgtctacaaaccctttattcgcgattttctcaagaaggcttcggatagaaaactgaagagagtggaatcggtggcaccgtttgacgca |
11831 |
T |
|
| Q |
207 |
tgttttgactcgactagcattgaaaattctgcaccaagaattgatcttttgcttcaagggggtgtgcagtggactatacatgaaaccaatttaatggtta |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11832 |
tgttttgactcgactagcattgaaaattctgcaccaagaattgatcttttgcttcaaggaggtgtgcagtggactatacatgaaaccaatttaatggtta |
11931 |
T |
|
| Q |
307 |
atgtaaagaaaaatgtagcatgtttggcatttgtcgatggaggggcatcaccaagatggtcgtctgcaaaagcttcaattgttattggtggacatcaatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11932 |
atgtaaagaaaaatgtagcatgtttggcatttgtcgatggagggacatcaccaagatggtcgtctgcaaaagcttcagttgttattggtgg--------- |
12022 |
T |
|
| Q |
407 |
ggtgaacaatcttttggtgtttgatctagcttcctctaaattgagctttagttcctcacttttggtccacaatgcaagttgttcctaaatcctactcttg |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12023 |
-----acaatcttttggtgtttgatctagcttcctctaaattgagctttagttcctcacttttggtccacaatgcaagttgttcctaaatcctactcttg |
12117 |
T |
|
| Q |
507 |
aattaatggcatatgttcattaagcattttagattatattagccacattgaatgttgcaactttgatttttcacttttctcaacttttgtttgctttgtg |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12118 |
aattaatggcatatgttcattaagcattttagattatattagccacattgaatgttgcaacttttatttttcacttttctcaacttttgtttgctttgtg |
12217 |
T |
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| Q |
607 |
taacctaaaatggttgttctgttcttca |
634 |
Q |
| |
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||||||||||| |||||||||||||||| |
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| T |
12218 |
taacctaaaattgttgttctgttcttca |
12245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 533
Target Start/End: Complemental strand, 7774446 - 7773923
Alignment:
| Q |
10 |
ttgatggtaatgttttgaacttaaagccttctttgttttctattgacaaaaagggaaatggtggcaccaaaattagtaccttgagtcctttcactaaatt |
109 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||| |
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| T |
7774446 |
ttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtggcaccaaaattagtaccataattcctttcactgaatt |
7774347 |
T |
|
| Q |
110 |
gcaaaattctgtctacaaaccctttattcgcgattttctcaagaaggcttcggatagaaaactgaagagagtggaatcagtggcatcatttgacgcatgt |
209 |
Q |
| |
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||||| |||||| ||||| || |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||| |||||| |
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| T |
7774346 |
gcaaagttctgtatacaagccatttattcgtgattttctcaagaaggcttcggatagaaaaataaagagagtggaatcagtggcaccatttgaggcatgt |
7774247 |
T |
|
| Q |
210 |
tttgactcgactagcattgaaaattctgcaccaagaattgatcttttgcttcaagggggtgtgcagtggactatacatgaaaccaatttaatggttaatg |
309 |
Q |
| |
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|||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| || ||||| |||||||| |||||| | ||||| |||||||||| |
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| T |
7774246 |
tttgactcttctagcattaaaaattctgtaccaagagttgatcttgtgcttcaaggtggagtgcaatggactattcatgaagcaaatttgatggttaatg |
7774147 |
T |
|
| Q |
310 |
taaagaaaaatgtagcatgtttggcatttgtcgatggaggggcatcaccaagatggtcgtctgcaaaagcttcaattgttattggtggacatcaattggt |
409 |
Q |
| |
|
| |||||||||||||||||| | | | |||| ||||||||| || |||||| ||| | | |||||||||||||||||||||||||||||||||||| |
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|
| T |
7774146 |
tgaagaaaaatgtagcatgtcttggaattgttgatggagggacagagccaagaatgtcatttacaaaagcttcaattgttattggtggacatcaattgga |
7774047 |
T |
|
| Q |
410 |
gaacaatcttttggtgtttgatctagcttcctctaaattgagctttagttcctcacttttggtccacaatgcaagttgttcctaaatcctactcttgaat |
509 |
Q |
| |
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| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
7774046 |
ggacaatcttttggtgtttgatttagcttcttccaaattgagctttagttcctcacttttggttcacaatgcaagttgttcctaaattctactcttgaat |
7773947 |
T |
|
| Q |
510 |
taatggcatatgttcattaagcat |
533 |
Q |
| |
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|||||||||| ||| || |||||| |
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| T |
7773946 |
taatggcataggtttataaagcat |
7773923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 575
Target Start/End: Complemental strand, 7767122 - 7766555
Alignment:
| Q |
7 |
agattgatggtaatgttttgaacttaaagccttctttgttttctattgacaaaaagggaaatggtggcaccaaaattagtaccttgagtcctttcactaa |
106 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||||||||||| | |
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| T |
7767122 |
agattgatggcaatgttttgaacataaagccttctttgttgtctattgacaaaaagggaaacggtggcaccaaaattagtacaattagtcctttcactga |
7767023 |
T |
|
| Q |
107 |
attgcaaaattctgtctacaaaccctttattcgcgattttctcaagaaggcttcggatagaaaactgaagagagtggaatcagtggcatcatttgacgca |
206 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||| |
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| T |
7767022 |
attgcaaacttctgtgtacaagccctttattcgtgattttctcaaaaaggcttcagatagaaaactaaagagagtggaatcagtggcaccatttgaggca |
7766923 |
T |
|
| Q |
207 |
tgttttgactcgactagcattgaaaattctgcaccaagaattgatcttttgcttcaagggggtgtgcagtggactatacatgaaaccaatttaatggtta |
306 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| || |||||||||||||| |||||| ||||||| ||||||| |
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| T |
7766922 |
tgttttgactcttctagcattaaaaattctgtaccaagagttgatcttgtgcttcaaggtggagtgcagtggactattcatgaagccaatttgatggtta |
7766823 |
T |
|
| Q |
307 |
atgtaaagaaaaatgtagcatgtttggcatttgtcgatggaggggcatcaccaagatggtcgtctgcaaaagcttcaattgttattggtggacatcaatt |
406 |
Q |
| |
|
||||||||||||||||||||||| | | |||||| ||||||||| || |||||| ||| | | | ||| |||||||||||||||||||||||||||| |
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|
| T |
7766822 |
atgtaaagaaaaatgtagcatgtcttggatttgttgatggagggacagagccaagaatgtcatttaccaaaacttcaattgttattggtggacatcaatt |
7766723 |
T |
|
| Q |
407 |
ggtgaacaatcttttggtgtttgatctagcttcctctaaattgagctttagttcctcacttttggtccacaatgcaagttgttcctaaatcctactcttg |
506 |
Q |
| |
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|| |||||||||||||||||||| | ||||| || ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
7766722 |
ggaagacaatcttttggtgtttgatttggcttcttccaaattgagcttcagttcctcacttttggtccatagtgcaagttgttcctaaatcctactctta |
7766623 |
T |
|
| Q |
507 |
aattaatggcatatgttcattaagcattttagattatattagccacattgaatgttgcaactttgattt |
575 |
Q |
| |
|
|| ||||||||| ||| |||||||| ||||| |||||||| | ||||||||||||| ||| ||||| |
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|
| T |
7766622 |
aagcaatggcataggtttattaagca-tttagcttatattattcggattgaatgttgcagcttagattt |
7766555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 26135654 - 26135828
Alignment:
| Q |
121 |
tctacaaaccctttattcgcgattttctcaagaaggcttcggatagaaaactgaagagagtggaatcagtggcatcatttgacgcatgttttgactcgac |
220 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||| |||||| |||||||||| |||| |||||||||||||||| ||||||| |||||||||||||| || |
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|
| T |
26135654 |
tctacaaaccttttattcgcgactttttcaagaacgcttcgaatagaaaactcaaga-agtggaatcagtggcaccatttgaggcatgttttgactcaac |
26135752 |
T |
|
| Q |
221 |
tagcattgaaaattctgcaccaagaattgatcttttgcttcaagggggtgtgcagtggactatacatgaaaccaat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
26135753 |
tagcattgaaaattctgcaccaagaattgatcttttgcttcaagaaggtatgcagtggactattcatgaaaccaat |
26135828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 7733779 - 7733843
Alignment:
| Q |
150 |
aagaaggcttcggatagaaaactgaagagagtggaatcagtggcatcatttgacgcatgttttga |
214 |
Q |
| |
|
||||||||||| |||| |||| | |||| ||||| |||||||||| ||||||| |||||||||| |
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|
| T |
7733779 |
aagaaggcttctgataaaaaaataaagaaagtggcatcagtggcaccatttgatacatgttttga |
7733843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 379 - 491
Target Start/End: Complemental strand, 48521695 - 48521583
Alignment:
| Q |
379 |
cttcaattgttattggtggacatcaattggtgaacaatcttttggtgtttgatctagcttcctctaaattgagctttagttcctcacttttggtccacaa |
478 |
Q |
| |
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|||||||| |||||||||| |||||||||| | | |||||| ||| ||||||||| | |||||| ||| | ||||||| ||||||||||| || |||| |
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| T |
48521695 |
cttcaattattattggtgggcatcaattggaggataatcttgtggagtttgatcttgtttcctcaaaacttggctttagctcctcacttttactcaacaa |
48521596 |
T |
|
| Q |
479 |
tgcaagttgttcc |
491 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48521595 |
agcaagttgttcc |
48521583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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