View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623-INSERTION-4 (Length: 526)
Name: NF1623-INSERTION-4
Description: NF1623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623-INSERTION-4 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Original strand, 5389748 - 5390271
Alignment:
| Q |
8 |
tgctgagggtgcaggaagaggtaatccgaaaaagatgaccatgtttatgaatcccaaaaggtgttctcgccgccgacacctggttgttcgttgtggcata |
107 |
Q |
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| T |
5389748 |
tgctgagggtgcaggaagaggtaatccgaaaaagatgaccatgtttatgaatcccaaaaggtgttctcgccgccgacaccaggttgttcgttgtggcata |
5389847 |
T |
|
| Q |
108 |
acctctgtttatttcatcctgacgttgtcctccaggctaccatcagcactgt----cctcctcaacccaataaggatctccaatccaccacagctaaaag |
203 |
Q |
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| T |
5389848 |
acctctgtttatttcatcctgacgttgtcctccaggctaccatcagcactgtctgtcctcctcaacctaataaggatctccaatccaccacagctaaaag |
5389947 |
T |
|
| Q |
204 |
tggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttattgatatctgtaatctatctatctatatgtatcagtttg |
303 |
Q |
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| T |
5389948 |
tggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttatgtgttattgatatctgtaatctatctatctatatgtatcagtttg |
5390047 |
T |
|
| Q |
304 |
ttgtgagtgtgaaggtgttatggtatcaaaattatatatttagataacctttatcaggctttactggttatgtccagtgatgaaaatatatattatttgt |
403 |
Q |
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| T |
5390048 |
ttgtgagtgtgaaagtgttatggtatcaaaattatatatttaaataacctttatcaggctttactggttatgtccagtgatgaaaatgtatattatttgt |
5390147 |
T |
|
| Q |
404 |
ttgc--tatatgtattttgtattgccccatgttatatggttatacagattgaaataaaattcacatgtgttttttgtgtctcagactatcacaatacgta |
501 |
Q |
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| T |
5390148 |
ttgctatatatgtattttgtattgtcccatgttataaggttatacagattgaaataaaattcacatgtgttttttgtgtctcagactatcacaatacgta |
5390247 |
T |
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| Q |
502 |
gcatcctttatttttcttttcttg |
525 |
Q |
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| T |
5390248 |
gcatcttttatttttcttttcttg |
5390271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 167 - 357
Target Start/End: Original strand, 5393630 - 5393815
Alignment:
| Q |
167 |
aacccaataaggatctccaatccaccacagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttatt |
266 |
Q |
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|||| ||||||||||| || || | |||| |||||||||||||| |||| ||||| |||||||||||||||||| |||||| | ||||||| ||||||| |
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| T |
5393630 |
aacctaataaggatcttcattctatcacatctaaaagtggtaattctaaaattgacagccttccgtgatgagaggttgtggtcatggtttatgtgttat- |
5393728 |
T |
|
| Q |
267 |
gatatctgtaatctatctatctatatgtatcagtttgttgt--gagtgtgaaggtgttatggtatcaaaattatatatttagataacctttat |
357 |
Q |
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| T |
5393729 |
------tgttatctatctatctatatgtatcagtttgttgtacgagtgtgaaagtactatggtatcaaaattatatgtttaaataacctttat |
5393815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 389 - 525
Target Start/End: Original strand, 5393870 - 5394019
Alignment:
| Q |
389 |
atatatattatttgtttgctatatgtattttgtatt---gccccatgttatatggttatacag----------attgaaataaaattcacatgtgttttt |
475 |
Q |
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| T |
5393870 |
atatatattatttgtgtgctatatgtattttgtattattgtcccatgttatatgcttatacaggtgtatgcagattgaaataaaattcacatgtgtttct |
5393969 |
T |
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| Q |
476 |
tgtgtctcagactatcacaatacgtagcatcctttatttttcttttcttg |
525 |
Q |
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| T |
5393970 |
tgtgtctgagtccatcacaatacgtagcatcttttatttttctattcttg |
5394019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 5398804 - 5398892
Alignment:
| Q |
178 |
gatctccaatccaccacagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttatt |
266 |
Q |
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| T |
5398804 |
gatctccaatccactgcagctaaaaatggtaatcctacaattgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 500
Target Start/End: Original strand, 5399100 - 5399156
Alignment:
| Q |
446 |
cagattgaaataaaattcaca--tgtgttttttgtgtctcagactatcacaatacgt |
500 |
Q |
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| T |
5399100 |
cagattgaaataaaattcacatgtgtgtttcttgtgtctcggagcatcacaatacgt |
5399156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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