View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1623-INSERTION-5 (Length: 203)
Name: NF1623-INSERTION-5
Description: NF1623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1623-INSERTION-5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 21901874 - 21901678
Alignment:
| Q |
8 |
attacttgttcaacaaattcctgtaaaatatttttgagttaaa-gtttgtaaaattcaatagtcggaacaatcaagtatacaatgtgttatgaagcaaat |
106 |
Q |
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| T |
21901874 |
attacttgttcaacaaattcctgtaaaatatttttgagttaaaagtttgtaaaattcaatagtcagaacaatcaagtatacaatgtgttatgaagcaaat |
21901775 |
T |
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| Q |
107 |
tacatgtcttttatcaatgctgatttcctttggaaggcgaagagatgcagaaaaccacagcgactcctcaatggtaacttgaggagaatgtatatca |
203 |
Q |
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| T |
21901774 |
tacatgtcttttatcaatgctgatttcctttggaaggcgaagagatgcagaaaaccacagcgactcctcaatggtaacttgaggagaatgtatatca |
21901678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 29777316 - 29777119
Alignment:
| Q |
8 |
attacttgttcaacaaattcctgtaaaatatttt--tgagttaaagtttgtaaaattcaatagtcggaacaatcaagtatacaatgtgttatgaagcaaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
29777316 |
attacttgttcaacaaattcctgtaaaatattttagtgagttaaagtttgtaaaattcaatagtcaaaacaatcagatatacaatgtgttatgaagcaaa |
29777217 |
T |
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| Q |
106 |
ttacatgtcttttatcaatgctgatttcctttggaaggcgaagagatgcagaaaaccacagcgactcctcaatggtaacttgaggagaatgtatatca |
203 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
29777216 |
ttacacgtcttttatcaatgctgatttcctttggaaggcgaagagatgcagaaaaccacagcgactcctcgatggtaacttgaggcgaatgtatatca |
29777119 |
T |
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