View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1623-INSERTION-6 (Length: 337)

Name: NF1623-INSERTION-6
Description: NF1623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1623-INSERTION-6
NF1623-INSERTION-6
[»] chr4 (2 HSPs)
chr4 (8-337)||(33699121-33699450)
chr4 (8-175)||(33658597-33658764)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 33699450 - 33699121
Alignment:
Q  8 caaatagtactccaatcacattatcagcaacttcctcatcacttaacattttccctttttcatccttgtagtttaacaaatggcctaatagatccttctc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33699450 caaatagtactccaatcacattatcagcaacttcctcatcacttaacattttccctttttcatccttgtagtttaacaaatggcctaatagatccttctc 33699351  T
Q  108 attcaatctctgctcctttctcctgcaaattatctcacttataatctcttgaattcgccgcctcgcctaatataattagacaatttaaccaatttttagt 207  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33699350 attcaatctttgctcctttctcttgcaaattatctcacttataatctcttgaattcgccgcctcgcctaatttaattagacaatttaaccaatttttagt 33699251  T
Q  208 caagttatattattctagaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcatatataaaccaaaagttgcagt 307  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33699250 caagttatattattctaaaacttttatactgcgaccgcaattgcagttagtgatcgaaatttagaactactaaaatcatatataaaccaaaagttgcagt 33699151  T
Q  308 gcagtggagcttaccaaaagagctttggag 337  Q
    ||||||||||||||||||||||||||||||    
T  33699150 gcagtggagcttaccaaaagagctttggag 33699121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 33658764 - 33658597
Alignment:
Q  8 caaatagtactccaatcacattatcagcaacttcctcatcacttaacattttccctttttcatccttgtagtttaacaaatggcctaatagatccttctc 107  Q
    |||||||||||||||||||||||||||||| ||| |||||  |||   |||  || |||||||||||||||||||| || | ||||||||||| ||||||    
T  33658764 caaatagtactccaatcacattatcagcaatttcttcatctgttagagtttgtccattttcatccttgtagtttaagaagttgcctaatagattcttctc 33658665  T
Q  108 attcaatctctgctcctttctcctgcaaattatctcacttataatctcttgaattcgccgcctcgcct 175  Q
    | ||||||||||||||||| || |||||||||| ||||||||||||||  |||||| | |||||||||    
T  33658664 aatcaatctctgctcctttttcttgcaaattatttcacttataatctcccgaattctctgcctcgcct 33658597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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