View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16230_low_2 (Length: 465)
Name: NF16230_low_2
Description: NF16230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16230_low_2 |
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| [»] scaffold0025 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 51232664 - 51232296
Alignment:
| Q |
20 |
aaagggtaaaatagacatttttt-atgatttgtaggggtaggggcataattgttggggtatgggtataacttccagtaatgttttaaccctaagttatcg |
118 |
Q |
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| T |
51232664 |
aaagggtaaaattgacatttttttatgatttgtaagggtaggggcataattgttggggtatgggtataacttccagtaatgttttaaccctaagttatcg |
51232565 |
T |
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| Q |
119 |
gtttacatctgcatattcgatttgtgtaatttat------atttctaaatattaactacactttgtctatagtatgtataattgaactattaaattattt |
212 |
Q |
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| T |
51232564 |
gtttacatctgcatattcgatttgtgtaatttatatttatatttcaaaatattaactacactttgtctatagtatgtataattgaactattaaattattt |
51232465 |
T |
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| Q |
213 |
tcaagtatcatttctggcannnnnnnnnnnnnnnnnnngccttgttacttacaagttacaacataaaatgaagggtggatatctcattattttgttgaac |
312 |
Q |
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| T |
51232464 |
tcaaatatcatttctggca----------tttttttttgccttgttacttacaagttacaacataaaatgaagggtggatatctc---attttgttgaac |
51232378 |
T |
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| Q |
313 |
tatgagtttaaaggagttaaagt------------tgatggcgaaagagaatatgctagcatctaaaatggatttgctcgtt |
382 |
Q |
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| T |
51232377 |
tatgagtttaaaggagttaaagttcaaggttcaaatcatggcgaaagagaatatgctagcatctaaaatggatttgctcgtt |
51232296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 11416268 - 11416227
Alignment:
| Q |
36 |
attttttatgatttgtaggggtaggggcataattgttggggt |
77 |
Q |
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| T |
11416268 |
attttttataatttgtaggggtagagggataattgttggggt |
11416227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 49722 - 49677
Alignment:
| Q |
37 |
ttttttatgatttgtaggggtaggggcataattgttggggtatggg |
82 |
Q |
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| T |
49722 |
tttttaattatttgtaggggtaggggtataattgttggggtatggg |
49677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 50320 - 50385
Alignment:
| Q |
17 |
tggaaagggtaaaatagacattttttatgatttgtaggggtaggggcataattgttggggtatggg |
82 |
Q |
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| T |
50320 |
tggaaagggtaaaattgctattttcaatggtttataggggtagaggtataattgttggggtatggg |
50385 |
T |
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