View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16230_low_3 (Length: 296)
Name: NF16230_low_3
Description: NF16230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16230_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 47916139 - 47916413
Alignment:
| Q |
14 |
caatttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatctctgttggaaagtaaactgtcaagggaaagaacgatatg |
113 |
Q |
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| T |
47916139 |
caatttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatctctgttggaaagtacactgtcaagggaaagaacgatatg |
47916238 |
T |
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| Q |
114 |
gctcctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgt |
213 |
Q |
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| T |
47916239 |
gctcctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgt |
47916338 |
T |
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| Q |
214 |
tcattctccatatgccaacaaatggaattcttacatcatattcttttgtcatcaatttgctttgtggcctttgct |
288 |
Q |
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| T |
47916339 |
tcattctccatatgccaacaaatggaattcttacatcatattcttttgtcatcaatttgctttgtggccattgct |
47916413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 47901445 - 47901713
Alignment:
| Q |
14 |
caatttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatctctgttggaaagtaaactgtcaagggaaagaacgatatg |
113 |
Q |
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| T |
47901445 |
caatttcattccaatccatatagaagaatatttgggcactttggcttgtgtcaagtacatctctattggaaagtacactgtcaaaggaaagaatgaaata |
47901544 |
T |
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| Q |
114 |
gctcctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgt |
213 |
Q |
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| T |
47901545 |
gctcctaacaaacccacaacgctgttgaagaatggaaatatcatagcaatcactgttgtgaatatcacatataatgtcctccatatcaccctgaacatgt |
47901644 |
T |
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| Q |
214 |
tcattctccatatgccaacaaatggaattcttacatcatattcttttgtcatcaatttgctttgtggcc |
282 |
Q |
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| T |
47901645 |
tcattctccatgtgccaaccaatggaatttttacataatattcttgtgtcaccagtttgctttgtggcc |
47901713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 47922574 - 47922839
Alignment:
| Q |
17 |
tttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatctctgttggaaagtaaactgtcaagggaaagaacgatatggct |
116 |
Q |
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| T |
47922574 |
tttcatccttatccatatacaagaatacttgggtactctagcttgtttcaggtacatctctattggaaagtacacggtcaagggaaagaacgacatggct |
47922673 |
T |
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| Q |
117 |
cctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgttca |
216 |
Q |
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|||| |||||| |||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||| | |||||||||| ||| |||||||||||||| |
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| T |
47922674 |
cctaacaaaccaacaatgttgttgaaaaatggaaatatcatagcaatcaatgttgtaattatcacatataatgtcctccatatcaccctgaacatgttca |
47922773 |
T |
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| Q |
217 |
ttctccatatgccaacaaatggaattcttacatcatattcttttgtcatcaatttgctttgtggcc |
282 |
Q |
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| T |
47922774 |
ttctccatgtgccaaccaatggaattcttacatcatattcttgtgttatcaatttgctttgtggcc |
47922839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 47907692 - 47907957
Alignment:
| Q |
17 |
tttcatcccaatccatatagtagaatacttgggcacttgggcttgtgtcaagtacatctctgttggaaagtaaactgtcaagggaaagaacgatatggct |
116 |
Q |
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|||||| ||||||||||||| |||||| ||||| || | |||||| ||| ||||| |||||||||||||| |||||||| ||||| || ||||||||| |
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| T |
47907692 |
tttcattccaatccatatagaagaatatttgggaaccttagcttgtttcagatacatttctgttggaaagtacactgtcaatggaaaaaaggatatggct |
47907791 |
T |
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| Q |
117 |
cctagcaaacccacaacgttgttgaagaatggtaatatcatagcaatcaatgttgtgattatcacataaattgtcctccatgtcaacctgaacatgttca |
216 |
Q |
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|||||||| ||||||| | | ||||||||||||||||| |||||||||| ||| |||| ||||||||| ||||||||||| | ||||| ||||| |||| |
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| T |
47907792 |
cctagcaatcccacaatgctattgaagaatggtaatatgatagcaatcactgtcgtgaatatcacatacattgtcctccaaattaacctaaacatattca |
47907891 |
T |
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| Q |
217 |
ttctccatatgccaacaaatggaattcttacatcatattcttttgtcatcaatttgctttgtggcc |
282 |
Q |
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|||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||||||||||| |
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| T |
47907892 |
ttctccatatgccaactaatggaatgtttacatgatattcttttgtcataaatttgctttgtggcc |
47907957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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