View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16230_low_5 (Length: 261)
Name: NF16230_low_5
Description: NF16230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16230_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 8001645 - 8001413
Alignment:
| Q |
16 |
atagagtgagaaacaattaaggacataataagaaaaataacattatgtattgcaaagcgacttataaattgagacgcgtgaataattaaaaagttggtgt |
115 |
Q |
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| T |
8001645 |
atagagtgagaaacaattaaggacataataagaaaaataacattatatattgcaaaacgacttataaattgagacgcgtgaatacttaaaaagttgatgt |
8001546 |
T |
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| Q |
116 |
gtgtagactaaattttgaccacatgcattgattttttaactacaacttttacttatatttcattaagtgagtacatcaaaacatatttaagtatgattag |
215 |
Q |
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| T |
8001545 |
gtgtagacgaaattttgaccacatgcattgattttttaactaccacttttacttatatttcattaagtgagtacatcaaaatatatttaagtatgattag |
8001446 |
T |
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| Q |
216 |
attataatccactttaattagtatgatgatgtt |
248 |
Q |
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| T |
8001445 |
attataatccacttgaattagtatgatgatgtt |
8001413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 35990558 - 35990634
Alignment:
| Q |
104 |
aaaagttggtgtgtgtagactaaattttga-ccacatgcattgattttttaactacaacttttacttatatttcatt |
179 |
Q |
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| T |
35990558 |
aaaagttgatgtatgtagactaaatttttaaccacatacattgacttttcaactaccgcttttgcttatatttcatt |
35990634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 179
Target Start/End: Complemental strand, 5362102 - 5362026
Alignment:
| Q |
104 |
aaaagttggtgtgtgtagactaaattttga-ccacatgcattgattttttaactacaacttttacttatatttcatt |
179 |
Q |
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|||||||| || ||||||||||||||| | |||||| |||||| ||||||||||| | |||| ||||||||||||| |
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| T |
5362102 |
aaaagttgaagtatgtagactaaattttcaaccacatacattgactttttaactaccatttttgcttatatttcatt |
5362026 |
T |
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