View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16230_low_6 (Length: 210)
Name: NF16230_low_6
Description: NF16230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16230_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 4885346 - 4885163
Alignment:
| Q |
8 |
ggtcgagtgagaagaaatcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaa |
107 |
Q |
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| T |
4885346 |
ggtcgagt-agaagaaatcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaa |
4885248 |
T |
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| Q |
108 |
gatggcggagttgttcctaagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctcc |
192 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4885247 |
gatggcggtgttgttcctaagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctcc |
4885163 |
T |
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