View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_high_13 (Length: 393)
Name: NF16231_high_13
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 387
Target Start/End: Complemental strand, 2926620 - 2926252
Alignment:
| Q |
21 |
tttaatacattgcctagacgtagatctgtttgatctctgtatcagcgacacttttaatcgaagacttgtacataatgttgtcgatgcgtctgt-----gt |
115 |
Q |
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| T |
2926620 |
tttaatacattgcctagacgtagatctgtttgatctctgtatcagcgacacttttaatggaagacttgtacataatgttgtcgatgcgtctgttgcgtgt |
2926521 |
T |
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| Q |
116 |
ctgtgtctatgctgcatagtcttgcgatatatatgtgattata-aaatatttgatgtgttttgtgtgcgtgtgtggttgatgcagtggtgttggttatgt |
214 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2926520 |
ctgtgtctatgatgcatagtcttgcgatatatatgtgattatacaaatatttgatgtgttttgtgtg----tgtggttgatgcagtggtgttggttatgt |
2926425 |
T |
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| Q |
215 |
ggcatatcgcgagttttatccatcggaagtggaggcggttaccgataggaaaaaagtggtggtgttgggaacaggatgggcggcaacaagttttatgaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2926424 |
ggcatatcgcgagttttatccatcggaagtggaggcggttaccgataggaaaaaagtggtggtgctgggaacaggatgggcggcaacaagttttatgaag |
2926325 |
T |
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| Q |
315 |
aatctggacagtccaaagtatgaagtacaggtggtttcgcctcgtaactattttgcattcactcctttgcttc |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926324 |
aatctggacagtccaaagtatgaagtacaggtggtttcgcctcgtaactattttgcattcactcctttgcttc |
2926252 |
T |
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