View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_high_15 (Length: 355)
Name: NF16231_high_15
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_high_15 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 23573677 - 23573311
Alignment:
| Q |
1 |
catggaagaacacttgttgggagaggtcaacacttaaatggacctcgttacattaaataattagtctcaaaccttcggctgaaggataccttgggcaaaa |
100 |
Q |
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| T |
23573677 |
catggaagaacacttgttgggagaggtcaacacttaaatggacctcgttacattaaataattagtctcaaaccttcggctgaaggataccttgggcaaaa |
23573578 |
T |
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| Q |
101 |
ataaatgtattattaagatgaatgggcattgttaattttgggagatcactactatcaacata-------taacgaagagtgtggagctgtcaaaatagca |
193 |
Q |
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| T |
23573577 |
ataaatgcattattaagatgaatgggcaatgttaattttgggagattactactatcaacatacataatataacgaagggtgtggagctgtcaaaatagca |
23573478 |
T |
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| Q |
194 |
ttgtgtgccaaagcgtaaaagttagataacaagatacaacatagagaatatggcaaacttcttgggacaaatcttaa-----gcacggatagagatgatt |
288 |
Q |
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| T |
23573477 |
ttgtgtgccaaagcgtaaaagttagataacaagatacaacatagagaatatggcaaacttcttgggacaaatcttaagaactgcacggatagagatgatt |
23573378 |
T |
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| Q |
289 |
cttgttacatattgctctgattcaatagcattgtatatcatatgtcaagaataagtgatgtacattc |
355 |
Q |
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| T |
23573377 |
cttgttacatattgctctgattcaatagcattgtatatcatatgtcaagaataagtgatgtacattc |
23573311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 33 - 355
Target Start/End: Complemental strand, 23600745 - 23600419
Alignment:
| Q |
33 |
cttaaatggacctcgttacattaaataattagtctcaaaccttcggctgaaggataccttgggcaaaaataaa------tgtattattaagatgaatggg |
126 |
Q |
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| T |
23600745 |
cttaaatggatctccttaccttaattaattagtctctaaccttcggttgaatgataccttgggcaaaaaaaaaaaaaaatgcattattaagatgaatggg |
23600646 |
T |
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| Q |
127 |
cattgttaattttgggagatcactactatcaacata-------taacgaagagtgtggagctgtcaaaatagcattgtgtgccaaagcgtaaaagttaga |
219 |
Q |
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| T |
23600645 |
cattgttaattttgggagattactactatcaacatacataatataacgaagggtgtggagctgtcaaaatagcattgtgtgccaaagcataaaagttaga |
23600546 |
T |
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| Q |
220 |
taacaagatacaacatagagaatatggcaaacttcttgggacaaatcttaagcacggatagagatgattcttgttacatattgctctgattcaatagcat |
319 |
Q |
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| T |
23600545 |
taacaatatacaacatagagaatatggcaaactttttgggacaaat---------agatagagatgattcttgttacacattgcactgattcaagtgcat |
23600455 |
T |
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| Q |
320 |
tgtatatcatatgtcaagaataagtgatgtacattc |
355 |
Q |
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| T |
23600454 |
tgtatatcacatttcgagaataagtgatgtacattc |
23600419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 197 - 355
Target Start/End: Complemental strand, 23566787 - 23566611
Alignment:
| Q |
197 |
tgtgccaaagcgtaaaagttagataacaagatacaacatagagaatatggcaaacttcttgggacaaatcttaa-----gcacggat------------a |
279 |
Q |
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| T |
23566787 |
tgtgccaaaacataaaagttagataacaagatacatcatagagaatatggcaaacattttgggacaaatctaaagcactgcacggattgagatgtaaaga |
23566688 |
T |
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| Q |
280 |
gagatgattc-ttgttacatattgctctgattcaatagcattgtatatcatatgtcaagaataagtgatgtacattc |
355 |
Q |
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| T |
23566687 |
aagatgattctttgttacagattgctctgattcaagtgcattgtatatcatatatcaagaataagtgatgtacattc |
23566611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 355
Target Start/End: Complemental strand, 23590528 - 23590367
Alignment:
| Q |
212 |
aagttagataacaagatacaacatagagaatatggcaaacttcttgggacaaatcttaagcac-----ggatagagatg------------attctt-gt |
293 |
Q |
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| T |
23590528 |
aagttagataacaagatacaacatagagaatatggcagacattttgggacaaatctaaagcactgcacggattgagatgtaaagaaagatgattctttgt |
23590429 |
T |
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| Q |
294 |
tacatattgctctgattcaatagcattgtatatcatatgtcaagaataagtgatgtacattc |
355 |
Q |
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| T |
23590428 |
tacagattgctctgattcaagtgcattgtatatcatatatcaagaataagtgatgtacattc |
23590367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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