View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16231_high_16 (Length: 313)
Name: NF16231_high_16
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 53128427 - 53128712
Alignment:
| Q |
15 |
gagatgaagtatgcaataaaaatcaacaggagtggcaaaatcaagagaaagaagtggaaactgatgttggctttgtgcactgtttgcttgaagtttatat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53128427 |
gagatgaagtatgcaataaaaatcaacaggagtggcaaaatcaagagaaagaagtggaaactgatgttggctttgtgcactgtttgtttgaagtttatat |
53128526 |
T |
|
| Q |
115 |
aagatggaacaaatagcaaaaacatcacaatcccaactatggatactagttgcaaaggaggcgacttcaaaggccacgcca-nnnnnnnncctccaatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53128527 |
aagatggaacaaatagcaaaaacatcacaatcccaactatagatactagttgcaaaggaggcgacttcaaaggccacgccatttttttttcctccaatgc |
53128626 |
T |
|
| Q |
214 |
tctatgctactagcttgttaatttcctataatttatataatacatgagaaagaaagtggaattgtactacaccgcaaatttattga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53128627 |
tctatgctactagcttgttaatttcctataatttatataatacatgagaaagaaagtggaattgtactacaccgcaaatttattga |
53128712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University