View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_high_25 (Length: 211)
Name: NF16231_high_25
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 46633452 - 46633305
Alignment:
| Q |
11 |
atcatcaaagaaaataataaacaactctttagtaaaacagtgctgttctgaaatatatctaacttggtaacatttatacatgacaaaaaaccattacaaa |
110 |
Q |
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| T |
46633452 |
atcatcaaagaaaataa---acaactctttagtaaaacagtgctgttctgaaatatatctaacttggtaacatttatacatgacaaaaaaccattacaaa |
46633356 |
T |
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| Q |
111 |
tccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaag |
161 |
Q |
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| T |
46633355 |
tccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaag |
46633305 |
T |
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