View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16231_high_3 (Length: 631)
Name: NF16231_high_3
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 10 - 614
Target Start/End: Original strand, 14222310 - 14222912
Alignment:
| Q |
10 |
tgagaagaagaaaaatatcaaggtttctgatgcagaaaggatagctgatgcattgagtagaattgcatccgtgtgtgagtcgcgcacagctgctatgaag |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222310 |
tgagaagaaaaaaaatatcaaggtttctgatgcagaaaggatagctgatgcattgagtagaattgcatccgtgtgtgagtcgcgcacagctgctatgaag |
14222409 |
T |
|
| Q |
110 |
gcactgatagtacctgggacatctattcctgaagtgatcgctgagcttaattgcatagaggtcattggaatcgatcttgattggcattcccgatgttgtc |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14222410 |
gcactgatagtacctgcgacatctattcctgaagtgatcgctgagcttaattgcatagaggtcattgggatcgatcttgattggcattcccgatgttgtc |
14222509 |
T |
|
| Q |
210 |
aactgatgttgtttaagcctgcgagggaaatgtttgtagcattacaaggactgggaaatgagcaaagcttgttgaattggcttaaatatgcagcatatac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222510 |
aactgatgttgtttaagcctgcgagggaaatgtttgtagcattacaaggactgggaaatgagcaaagcttgttgaattggcttaaatatgcagcatatac |
14222609 |
T |
|
| Q |
310 |
acctctgccatttatgaaagaagtagattggtcaatgttttaaattagattttagagtgcttttgcattaggctaaagcattttatggcctacttagttt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222610 |
acctctgccatttatgaaagaagtagattggtcaatgttttaaattagattttagggtgcttttgcattaggctaaagcattttatggcctacttagttt |
14222709 |
T |
|
| Q |
410 |
ctttcttatgtattggcattgtactgtaccacttaagcttatgtgcttgctagttgactttaacaatgttgattgaattggttaaaccattagattctgc |
509 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222710 |
ctttcttatgtgttggcattttactgtaccacttaagctta--tgcttgctagttgactttaacaatgttgattgaattggttaaaccattagattctgc |
14222807 |
T |
|
| Q |
510 |
aagcttgctgcctagctgtaatagaatctcaaaacactgcttcatgcaaactttcttcatattacatttccagcttttgaaactcagtttattgtgcctt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14222808 |
aagcttgctgcctagctgtaatagaatctcaaaacactgcttcatgcaaactttcttcatattacatttccagcttttgaaactcagtttattgtgcctt |
14222907 |
T |
|
| Q |
610 |
gtgtt |
614 |
Q |
| |
|
||||| |
|
|
| T |
14222908 |
gtgtt |
14222912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University