View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16231_high_6 (Length: 521)
Name: NF16231_high_6
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 46752904 - 46753258
Alignment:
| Q |
17 |
agaaagaattgaaaaaggtccaaaagatttactaggactaatgatagaagctagctccaacaacaataacaccaatgtgacagtggatgatatcgtggaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46752904 |
agaaagaattgaaaaaggtccaaaagatttactaggactaatgatagaagctagctccaacaacaacaacaccaatgtgacagtggatgatatcgtggaa |
46753003 |
T |
|
| Q |
117 |
gagtgcaagagctttttctttgcaggcaaacaaaccacatcaaacttgctgacgtggacgaccattctcttagcaatgcacccacaatggcaagtacagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46753004 |
gagtgcaagagctttttctttgcaggcaaacaaaccacatcaaacttgctgacgtggacgaccattctcttagcaatgcacccacaatggcaagtacagg |
46753103 |
T |
|
| Q |
217 |
cacgtgatgaggtcctaaagatgtgtgggtcacgtgaccttccaactaaagatcatgttgtaaagcttaagacggtaagccaaaggcagcccctccccac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46753104 |
cacgtgatgaggtcctaaagatgtgtgggtcacgtgaccttccaactaaagatcatgttgtaaagcttaagacggtaagccaaaggcagcccctccccac |
46753203 |
T |
|
| Q |
317 |
ccatcaacacttttatgctacatcagattaatatttggaccccaaataaaaatta |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46753204 |
ccatcaacacttttatgctacatcagattaatatttggaccccaaataaaaatta |
46753258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 429 - 504
Target Start/End: Original strand, 46753316 - 46753391
Alignment:
| Q |
429 |
cttcctcttaccccttgtgaagggaacatctagccaaacactgctcatttacacctccccaactggcaattctcta |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46753316 |
cttcctcttaccccttgtgaagggaacatctagccaaacactgctcatttacacctccccaactggcaattctcta |
46753391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University