View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16231_low_10 (Length: 458)

Name: NF16231_low_10
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16231_low_10
NF16231_low_10
[»] chr4 (3 HSPs)
chr4 (226-363)||(2464463-2464601)
chr4 (242-369)||(6736510-6736629)
chr4 (385-428)||(2464618-2464660)
[»] chr2 (4 HSPs)
chr2 (261-451)||(28173413-28173596)
chr2 (227-369)||(11951637-11951782)
chr2 (226-369)||(2743968-2744109)
chr2 (17-64)||(28156818-28156865)
[»] scaffold0312 (1 HSPs)
scaffold0312 (227-369)||(18990-19133)
[»] chr1 (1 HSPs)
chr1 (227-369)||(411437-411580)
[»] chr3 (2 HSPs)
chr3 (230-363)||(45227735-45227870)
chr3 (226-367)||(29896665-29896808)
[»] chr7 (1 HSPs)
chr7 (226-311)||(26300141-26300227)
[»] chr6 (1 HSPs)
chr6 (226-369)||(29935083-29935224)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 226 - 363
Target Start/End: Original strand, 2464463 - 2464601
Alignment:
Q  226 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgt 324  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  2464463 agcatgaatgagttttcaaaggatgaaatttttagttaaaaaatggtttggataaagaccggtgaaaacttcactcatccattatgtccactttgtttgt 2464562  T
Q  325 tatgatcccattgaattcttgtgactcaccatttctttg 363  Q
     ||| ||||||||||||||||||||||||||||||||||    
T  2464563 catgctcccattgaattcttgtgactcaccatttctttg 2464601  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 6736629 - 6736510
Alignment:
Q  242 caaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgttatgatcccattgaat 340  Q
    |||||||||||| |||||||||||||||||||||| |||||||||         |||||   ||||||| || ||||||||||| ||| |||| ||||||    
T  6736629 caaaggatgaaacttttagtttaaaaattgtttgggtaaagaccg---------tcacttacccattatttctactttgtttgtcatgctcccgttgaat 6736539  T
Q  341 tcttgtgactcaccatttctttgatttca 369  Q
    ||||||||||||||||||||||| |||||    
T  6736538 tcttgtgactcaccatttctttggtttca 6736510  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Original strand, 2464618 - 2464660
Alignment:
Q  385 attcacagtttgcaaaggattaaatctcttggagttttcttctt 428  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  2464618 attcacagtttgcaaaggatt-aatctcttggagttttcatctt 2464660  T

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Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 261 - 451
Target Start/End: Original strand, 28173413 - 28173596
Alignment:
Q  261 tttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgttatgatcccattgaattcttgtgactcaccatttc 359  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28173413 tttaaaaattgtttggataaagaccggtgaaaacttcacttgtccattatgtccactttgtttgttatgaccccattgaattcttgtgactcaccatttc 28173512  T
Q  360 tttgatttcannnnnnnnnnnnnagattcacagtttgcaaaggattaaatctcttggagttttcttcttgtctacgaaaaacacctatgcta 451  Q
    ||||||||||             ||| ||| ||||||||||||||||||||||||||||||   |||||||||| |||||||||||||||||    
T  28173513 tttgatttca-----ttttttttagagtcagagtttgcaaaggattaaatctcttggagtt---ttcttgtctaggaaaaacacctatgcta 28173596  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 11951637 - 11951782
Alignment:
Q  227 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccatt--atgtccactttgtttg 323  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |  || |||  ||||||||||||||||    
T  11951637 gcatgaatgagtttccaaaggatgaaatttttagtttaaaaattgtttggataaagaccggtgaaattttcatttatctattaaatgtccactttgtttg 11951736  T
Q  324 ttatgatcccattgaattcttgtgactcaccatttctttgatttca 369  Q
    | ||| |||||||||||| ||||||||||||||||||||| |||||    
T  11951737 tcatgctcccattgaattattgtgactcaccatttctttggtttca 11951782  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 2743968 - 2744109
Alignment:
Q  226 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgt--ccattatgtccactttgttt 322  Q
    ||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||||||||      |||| || | |  ||||||| |  |||||||||    
T  2743968 agcatgaatgagttttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 2744062  T
Q  323 gttatgatcccattgaattcttgtgactcaccatttctttgatttca 369  Q
    || ||| |||||||||||||||||||||||||||||||||| |||||    
T  2744063 gtcatgctcccattgaattcttgtgactcaccatttctttggtttca 2744109  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 28156818 - 28156865
Alignment:
Q  17 agatataaaccaaatgaaatcactatacatatattgatacacacatat 64  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||    
T  28156818 agatataaaccaaatgaaatcacaaaacatgtattgatgcacacatat 28156865  T

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Target: scaffold0312 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 18990 - 19133
Alignment:
Q  227 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgtt 325  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||   |||||||||||||||||||||||     
T  18990 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 19089  T
Q  326 atgatcccattgaattcttgtgactcaccatttctttgatttca 369  Q
    ||| || ||||||||| ||||||||||||||||||||| |||||    
T  19090 atgctctcattgaattattgtgactcaccatttctttggtttca 19133  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 227 - 369
Target Start/End: Complemental strand, 411580 - 411437
Alignment:
Q  227 gcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgtccactttgtttgtt 325  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||  |||||   |||||||||||||||||||||||     
T  411580 gcatgaatgagtttccaaatgatgaaatttttagtttaaaaattgtttgggtaaagaccggtgaaattttcacctatccattatgtccactttgtttgtc 411481  T
Q  326 atgatcccattgaattcttgtgactcaccatttctttgatttca 369  Q
    ||| || ||||||||| ||||||||||||||||||||| |||||    
T  411480 atgctctcattgaattattgtgactcaccatttctttggtttca 411437  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 230 - 363
Target Start/End: Original strand, 45227735 - 45227870
Alignment:
Q  230 tgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgt-ccactttgtttgttat 327  Q
    |||||||| || | |||||||||||| |||||||||||||||||||| |||||||||||||||  ||||||   ||||||| | ||||||||||||| ||    
T  45227735 tgaatgagctttcgaaggatgaaattgttagtttaaaaattgtttgggtaaagaccggtgaaattttcacttacccattattttccactttgtttgtcat 45227834  T
Q  328 gatcccattgaattcttgtgactcaccatttctttg 363  Q
    | ||||||||||||||||||||||||||||||||||    
T  45227835 gctcccattgaattcttgtgactcaccatttctttg 45227870  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 367
Target Start/End: Complemental strand, 29896808 - 29896665
Alignment:
Q  226 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaa---ttgtttggtaaagaccggtgaaaacttcactcgtccattatgtccactttgttt 322  Q
    |||||||||||| ||  |||||||||| |||||||||||||||   | ||| | ||||||||||||||||| |||||| |||||||||||||||| ||||    
T  29896808 agcatgaatgagctttaaaaggatgaa-tttttagtttaaaaaaaatggttggataaagaccggtgaaaacatcactcatccattatgtccacttggttt 29896710  T
Q  323 gttatgatcccattgaattcttgtgactcaccatttctttgattt 367  Q
    || ||| ||||||||||||||||||| ||| ||||||||||||||    
T  29896709 gtcatgctcccattgaattcttgtgattcatcatttctttgattt 29896665  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 26300227 - 26300141
Alignment:
Q  226 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgtccattatgt 311  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  26300227 agcatgaatgagttttcaaaggatgaaatttttagtttaaaaattgtttggataatgaccgatgaaaacttcactcatccattatgt 26300141  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 369
Target Start/End: Original strand, 29935083 - 29935224
Alignment:
Q  226 agcatgaatgagtttacaaaggatgaaatttttagtttaaaaattgtttgg-taaagaccggtgaaaacttcactcgt--ccattatgtccactttgttt 322  Q
    |||||||||||| || |||| ||||||| |||||||||||||||||||||| |||||||||      |||| || | |  ||||||| |  |||||||||    
T  29935083 agcatgaatgagctttcaaatgatgaaacttttagtttaaaaattgtttgggtaaagaccgtc----actt-acccatacccattatttttactttgttt 29935177  T
Q  323 gttatgatcccattgaattcttgtgactcaccatttctttgatttca 369  Q
    || ||| ||||||||||||||||||||| |||||||||||| |||||    
T  29935178 gtcatgctcccattgaattcttgtgacttaccatttctttggtttca 29935224  T

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