View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_11 (Length: 449)
Name: NF16231_low_11
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_11 |
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| [»] scaffold0028 (4 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 276 - 438
Target Start/End: Original strand, 125764 - 125926
Alignment:
| Q |
276 |
actgagtttgcaaggagaagatttgaaaagagagtttctctttctcagcaagtgtaagtacaactcaagtgacatatgctttattcaaaacaccttttca |
375 |
Q |
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| T |
125764 |
actgagtttgcaaggagaagatttgaaaagagagtttctctttctcagcaagtgtaagtacaactgaagtgacatatgctttattcaaaacaccttttca |
125863 |
T |
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| Q |
376 |
aaatcttttgttggatttccctgctttccctcccttacggaagttgaagccttttctcctttg |
438 |
Q |
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| T |
125864 |
aaatcttttgttggatttccatgctttccctcccttacggaagttgaagccttttctcctttg |
125926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 125566 - 125644
Alignment:
| Q |
78 |
gaatattcagtataaacgttttgaaattattaccaggaagatgaacagttgagtatcacctgcaaaataacaacaaagg |
156 |
Q |
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| T |
125566 |
gaatattcaatataaacgttttgaaattattaccaggaagatgaacagttgagtatcacctgcaaaataacaacaaagg |
125644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 125436 - 125469
Alignment:
| Q |
17 |
aaaaaagatagataacaggatttgagcaaataag |
50 |
Q |
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| T |
125436 |
aaaaaagatagataacagcatttgagcaaataag |
125469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 125506 - 125539
Alignment:
| Q |
17 |
aaaaaagatagataacaggatttgagcaaataag |
50 |
Q |
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| T |
125506 |
aaaaaagatagataacgggatttgagcaaataag |
125539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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