View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16231_low_13 (Length: 426)

Name: NF16231_low_13
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16231_low_13
NF16231_low_13
[»] chr2 (1 HSPs)
chr2 (10-398)||(42358101-42358487)
[»] chr5 (2 HSPs)
chr5 (297-377)||(2639494-2639574)
chr5 (306-389)||(9749200-9749283)
[»] chr8 (3 HSPs)
chr8 (298-377)||(41139236-41139315)
chr8 (306-377)||(33306146-33306217)
chr8 (306-378)||(1895547-1895619)
[»] chr7 (3 HSPs)
chr7 (303-377)||(22365594-22365668)
chr7 (303-377)||(22361908-22361982)
chr7 (306-366)||(11474873-11474933)
[»] chr4 (2 HSPs)
chr4 (306-379)||(25371640-25371713)
chr4 (305-377)||(33870913-33870985)
[»] chr1 (2 HSPs)
chr1 (306-378)||(43046347-43046419)
chr1 (306-375)||(43084770-43084839)
[»] scaffold0128 (1 HSPs)
scaffold0128 (309-377)||(45529-45597)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 42358487 - 42358101
Alignment:
Q  10 agcagagaggatactgaaataagaataaggaaatgcactttcaatgtgtttttcttatcaaacaacttaagagcactcttgtatcttgtccattccttat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42358487 agcagagaggatactgaaataagaataaggaaatgcactttcaatgtgtttttcttatcaaacaacttaagagcactcttgtatcttgtccattccttat 42358388  T
Q  110 cttagcagagaaaacaccttcacgaaaagataaaattatacatccactcaaggaaaggaatgtaaattcaactccgtattacttggccctgaaacactca 209  Q
    ||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||  |     
T  42358387 cttactagagaaaacaccttcacgaaaagataaaattatacatctactcaaggaaaggaatgtaaattcaactccgtattacttggccctgaagca--cc 42358290  T
Q  210 gagaatcaaaattgtctcataaatgaactttataagtcatttattacattttatattacgttatatatataagcggatgatttcttttaacaacaagccc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||| ||||||    
T  42358289 gagaatcaaaattgtctcataaatgaactttataagtcatttattacattgtatattacgttatatacataagaggatgatttctttcaacaataagccc 42358190  T
Q  310 ttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaattatctttttgtattatat 398  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  42358189 ttatagctcagtggtagagcgccagtcttgtaaactggaggtccgtagttcgatcctgcgtgagggcaaatttcttttttgtattatat 42358101  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 2639494 - 2639574
Alignment:
Q  297 taacaacaagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 377  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2639494 taacaagaagcccttatagctcagtggtagagcgccagtcttgtaaactggaggtccgtagttcgatcctgcgtgagggca 2639574  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 9749283 - 9749200
Alignment:
Q  306 gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaattatcttttt 389  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||||| ||| |||||||    
T  9749283 gcccctatagctcagtggtagagcgccagtcttgtaaactggaggtctgtagttcgatcctgcatgggggcagattttcttttt 9749200  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 41139315 - 41139236
Alignment:
Q  298 aacaacaagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 377  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  41139315 aacaacaagcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccatagttcgatcctgcgtgagggca 41139236  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 33306146 - 33306217
Alignment:
Q  306 gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 377  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33306146 gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 33306217  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 1895547 - 1895619
Alignment:
Q  306 gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaa 378  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  1895547 gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgcagttcgatcctgcgtgagggcaa 1895619  T

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Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 22365668 - 22365594
Alignment:
Q  303 caagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 377  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22365668 caagcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 22365594  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 22361982 - 22361908
Alignment:
Q  303 caagcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 377  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  22361982 caagcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtctgtagttcgatcctgcgtgagggca 22361908  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 11474933 - 11474873
Alignment:
Q  306 gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcct 366  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  11474933 gcccctatagcttagtggtagagcgccagtcttgtaaactggaggtctgtagttcgatcct 11474873  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 25371640 - 25371713
Alignment:
Q  306 gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaa 379  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25371640 gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaaa 25371713  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 33870913 - 33870985
Alignment:
Q  305 agcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 377  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33870913 agcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 33870985  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 43046419 - 43046347
Alignment:
Q  306 gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaa 378  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  43046419 gcccttatagctcagtggtagagcatcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaa 43046347  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 43084839 - 43084770
Alignment:
Q  306 gcccttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgaggg 375  Q
    ||||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||||| ||||||||    
T  43084839 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 43084770  T

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Target: scaffold0128 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 45597 - 45529
Alignment:
Q  309 cttatagctcagtggtagagcgccagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggca 377  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  45597 cttatagctcagtggtagagcgccagtcctgtaaactgaaggtccgtagttcaatccttcgtgagggca 45529  T

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