View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_14 (Length: 400)
Name: NF16231_low_14
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 36571774 - 36571429
Alignment:
| Q |
19 |
aatctaatctaatgtaaggacttatagtcactcacatatggtcgtgaaggtcccacgggttcgtttttcagtctacctctatctaatcaaagtttgttgg |
118 |
Q |
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| T |
36571774 |
aatctaatctaatgtaaggacttatagtcactcacatatggtcgtgaaggtcccacgggttcgtttttcagtctacctctatctaatcaaagtttgttgg |
36571675 |
T |
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| Q |
119 |
gaacaaaatcatccactacaatccaacttttgattaagcaaaacagttaggagtatcatacttttcattcatcatgtgttggaaaaaggacctcctttgc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571674 |
gaacaaaatcatccactacaatccaacttttgattaatcaaaacagttaggagtatcatacttttcattcatcatgtgttggaaaaaggacctcctttgc |
36571575 |
T |
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| Q |
219 |
taacatctatggaaaacgatgcattagtccatctgtatgtgcatatcctccaatgaatacacttccaaattgcggtaacatcggtattggactttatagt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571574 |
taacatctatggaaaacgatgcattagtccatctgtatgtgcatatcctccaatggatacacttccaaattgcggtaacatcggtattggactttatagt |
36571475 |
T |
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| Q |
319 |
gacaagaaatttcaaagtaacatcctttgattagactttgcctctt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36571474 |
gacaagaaatttcaaagtaacatcctttgattagactttgcctctt |
36571429 |
T |
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