View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_23 (Length: 243)
Name: NF16231_low_23
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 23573777 - 23573979
Alignment:
| Q |
26 |
gagtaaatgaaatatagtagtatgtaaaatttcattcatattcaataagtgggcttacacaaaactttgtgtccttttttacattcagaatagatacctt |
125 |
Q |
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| T |
23573777 |
gagtaaataaaatatagtagaatgtaaaatttcattcatattcaataagtgggcttacacaaaactttgtgtccttttttacattcagaatagatacctt |
23573876 |
T |
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| Q |
126 |
tagatgcaaagccacaatgctgcaccaccaccctgcagaccactataatattgagatttagcttcatggaaacacttcattccacataaaagaaattata |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23573877 |
tagatgcaaagccacaatgctgcaccaccaccctgcagaccactataatattgagatttagcttcatggaaacacttcattccacataaaagaaattata |
23573976 |
T |
|
| Q |
226 |
tac |
228 |
Q |
| |
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||| |
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| T |
23573977 |
tac |
23573979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 23601495 - 23601698
Alignment:
| Q |
26 |
gagtaaatgaaatatagtagtatgtaaaatttcattcatattcaataagtgggcttacacaaaactttgtgtccttttttacattcagaatagatacctt |
125 |
Q |
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|||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
23601495 |
gagtaaataaaa-atagtagtatgtaaa-tttcagtcacattcaataagtgggcttacacaaaactctctgtatttttttacattcagaatagatacctt |
23601592 |
T |
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| Q |
126 |
tagatgcaaagccacaatgctgcaccaccaccctgcagaccactataatattgagatt---tagcttcatggaaacacttcattccacataaaagaaatt |
222 |
Q |
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||||||||||||| ||| ||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23601593 |
tagatgcaaagccgcaaggctgcaccacctccctgcagaccactacaataatgagattagcaagcttcatggaaacacttcattccacataaaagaaatg |
23601692 |
T |
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| Q |
223 |
atatac |
228 |
Q |
| |
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|||||| |
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| T |
23601693 |
atatac |
23601698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 23590762 - 23590890
Alignment:
| Q |
26 |
gagtaaatgaaatatagtagtatgtaaaatttcattcatattcaataagtgggcttacacaaaactttgtgtccttttttacattcagaatagatacctt |
125 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| ||| ||||| || ||||||||| |||||||||| |||| ||||||||||||||||||||||| | |
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| T |
23590762 |
gagtaaataaaatatagcagtatataaaatttatgtcacattcattatgtgggcttatacaaaactttctgtctttttttacattcagaatagatactat |
23590861 |
T |
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| Q |
126 |
tagatgcaaagccacaatgctgcaccacc |
154 |
Q |
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|||||||| ||| |||| |||||||||| |
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| T |
23590862 |
tagatgcagagcaacaagcctgcaccacc |
23590890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 23567167 - 23567252
Alignment:
| Q |
65 |
attcaataagtgggcttacacaaaactttgtgtccttttttacattcagaatagatacctttagatgcaaagccacaatgctgcaccac |
153 |
Q |
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|||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |
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| T |
23567167 |
attcaatatgtgggcttatacagaacattgt---cttttttacattcagaatagataccattagatgcagagccacaaggctgcaccac |
23567252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 23620070 - 23620115
Alignment:
| Q |
110 |
tcagaatagatacctttagatgcaaagccacaatgctgcaccacca |
155 |
Q |
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|||||||||||||| ||||||||| |||||||| |||||||||||| |
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| T |
23620070 |
tcagaatagataccattagatgcagagccacaaagctgcaccacca |
23620115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 213
Target Start/End: Original strand, 23590912 - 23590941
Alignment:
| Q |
184 |
tagcttcatggaaacacttcattccacata |
213 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23590912 |
tagcttcatggaaacacttcattccacata |
23590941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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