View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_27 (Length: 223)
Name: NF16231_low_27
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 33402227 - 33402035
Alignment:
| Q |
16 |
cacaaccttcactcgaacacattcccttatcacaaccccgccgccaaccaccgcgttccgattctcactcccaaaaccaccgtcttacacctccgcttca |
115 |
Q |
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| T |
33402227 |
cacaaccttcactcgaacacattcccttatcacaaacccgccgccaaccaccgcgttccgattctcactcccaaaaccaccgtcttacacctccgcttca |
33402128 |
T |
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| Q |
116 |
cgctactttcaaaaacgaatacgacaattgcgattcacaggtaaattattcttcttactcaatttcattcttcatatgctttttctgcttcat |
208 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33402127 |
cgctactgtcaaaaacgaatacgacaattgcgattcacaggtaaattattcttcttactcaatttcattcttcatatgctttttctgcttcat |
33402035 |
T |
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