View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_28 (Length: 218)
Name: NF16231_low_28
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 42130088 - 42130268
Alignment:
| Q |
18 |
cattatgtatggaattgaatgaacattatgaaaatttccttggttacataataccttccgttacataatatccgtctgtttctttcctttcttaattctg |
117 |
Q |
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| T |
42130088 |
cattatgtatggaattgaatgaacattatgaaaatttccttggttacataataccttccgttacataatatccgtctgtttctttcctttcttaattctg |
42130187 |
T |
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| Q |
118 |
ccaccctccatgcctaacattacatttaccatagtctaattaattgattcatctattatgcaagagttagttgctccttca |
198 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42130188 |
ccaccctccatgcctaacattacatttaccttagtctaattaatcgattcatctattatgcaagagttagttgctccttca |
42130268 |
T |
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