View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_4 (Length: 602)
Name: NF16231_low_4
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 484; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Original strand, 10031567 - 10032090
Alignment:
| Q |
17 |
aatccaaagcctagttcatatgcttgtcgtaagttcctaact----ttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10031567 |
aatccaaagcctagttcatatgcttgtcgtaagttcctaactaactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatat |
10031666 |
T |
|
| Q |
113 |
agacagagaacaggtaatttgtaatttaatttctttttatatgatgttgaataaatggagtttgcaaccattcaccttcaacattaactatcaatcaatg |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10031667 |
agacagagaacaggtaatttgtaatttaatttctttttatatgatgttgaataaatggagtttgcaaccattcaccttcaacattaactatcaatcaatg |
10031766 |
T |
|
| Q |
213 |
cattaatgaactatctaaaatcttgttttagattcatataggtcaagtttttgtaattgtgtctttgcttccttggagttactctacacaaacatgcttc |
312 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10031767 |
cat---------atctaaaatcttgttttagattcatataggtcaagtttttgtaattgtgtctttgcttccttggagttactctacacaaacatgcttc |
10031857 |
T |
|
| Q |
313 |
taatatcgatatgcatctgatataacacttgtaattcaaatcttgtgtatagttgaaacaaatggtggtagctactctatcggaatctggcatgagactt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10031858 |
taatatcgatatgcatctgatataacacttgtaattcaaatcttgtgtatagttgaaacaaatggtggtagctactctatcggaatctggcatgagactt |
10031957 |
T |
|
| Q |
413 |
acagaagaaatgcttaatagcatcatggacaaggtgatttatctatctgataacactatagtctatatgtatgtcgaatcttattatgttcacattccac |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10031958 |
acagaagaaatgcttaatagcatcatggacaaggtgatttatctatctgataacactatagtctatatgtatgtcgaatcttattatgttcacattccac |
10032057 |
T |
|
| Q |
513 |
aagtctaggtaaattgtgaaattaattaatagg |
545 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
10032058 |
aagtctaggtaaattgtgaaattaattaatagg |
10032090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Original strand, 10053480 - 10054003
Alignment:
| Q |
17 |
aatccaaagcctagttcatatgcttgtcgtaagttcctaa----ctttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10053480 |
aatccaaagcctagttcatatgcttgtcgttagttcctaattaactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatat |
10053579 |
T |
|
| Q |
113 |
agacagagaacaggtaatttgtaatttaatttctttttatatgatgttgaataaatggagtttgcaaccattcaccttcaacattaactatcaatcaatg |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10053580 |
agacagagaacgggtaatttgtaatttaatttctttttatatgatgttgaataaatggagtttgcaaccattcaccttcaacattaactatcaatcaatg |
10053679 |
T |
|
| Q |
213 |
cattaatgaactatctaaaatcttgttttagattcatataggtcaagtttttgtaattgtgtctttgcttccttggagttactctacacaaacatgcttc |
312 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10053680 |
cat---------atctaaaatcttgttttagattcatataggtcaagtttttgtaattgtgtctttgcttccttggagttactctacacaaacatgcttc |
10053770 |
T |
|
| Q |
313 |
taatatcgatatgcatctgatataacacttgtaattcaaatcttgtgtatagttgaaacaaatggtggtagctactctatcggaatctggcatgagactt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
10053771 |
taatatcgatatgcatctgatataacacttgtaattcaaatcttgtgtatagttgaaacaaatggtggtagctactctatcggaatttggcatgagactt |
10053870 |
T |
|
| Q |
413 |
acagaagaaatgcttaatagcatcatggacaaggtgatttatctatctgataacactatagtctatatgtatgtcgaatcttattatgttcacattccac |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10053871 |
acagaagaaatgcttaatagcatcatggacaaggtgatttatctatctgataacactatagtctatatgtatgtcgaatcttattatgttcacattccac |
10053970 |
T |
|
| Q |
513 |
aagtctaggtaaattgtgaaattaattaatagg |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
10053971 |
aagtctaggtaaattgtgaaattaattaatagg |
10054003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 10074324 - 10074772
Alignment:
| Q |
17 |
aatccaaagcctagttcatatgcttgtcgtaagttcctaactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatatagac |
116 |
Q |
| |
|
|||||| | |||| ||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
10074324 |
aatccagatcctaattcatatgcttgttgtgatttcctaactttcccttattacagttttattcagactgtatgatctcaaacagcaaggatatattgac |
10074423 |
T |
|
| Q |
117 |
agagaacaggtaatttgtaatttaatttctttttatatgatgttgaataaatggagtttgcaaccattcaccttcaacat--taactatcaatcaatgca |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||| |||| |||||| ||| ||||||| |
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|
| T |
10074424 |
agagaacag-------gtaatttaatttctttttatatggtgttgcataaatggagttt-caaccactcaccttctacattataactagcaaacaatgca |
10074515 |
T |
|
| Q |
215 |
ttaatgaactatctaaaatcttgttttagattcatataggtcaagtttttgtaat----tgtgtctttgcttccttggagttactctacacaaacatgct |
310 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| | |||| ||| ||||| | ||||| ||||| ||||||| ||||||| |||||||| |
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| T |
10074516 |
ttaatgaactatctaaaatcatgttttagattcat---gtgcaag-tttagtaattccatcgatcttttcttccatggagtttatctacaccaacatgct |
10074611 |
T |
|
| Q |
311 |
tctaatatcgatatgcatctgatataacacttgtaa-ttcaaatcttgtgtatagttgaaacaaatggtggtagctactctatcggaatctggcatgaga |
409 |
Q |
| |
|
||| ||| | ||| | |||||| |||| ||| ||| || |||||||||||||||| |||||||||||||||||||||| ||||||||| || | |
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|
| T |
10074612 |
tcttgtattggtat-tttttgatatgcaacttataatttcttattttgtgtatagttgaaagaaatggtggtagctactctatctgaatctggcgtgcaa |
10074710 |
T |
|
| Q |
410 |
cttacagaagaaatgcttaatagcatcatggacaaggtgatttatctatctgataacactat |
471 |
Q |
| |
|
||| |||| | || | ||| ||||||| ||||||||||||||| ||||||||||||||| |
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|
| T |
10074711 |
ctttcagattacgtgatcaatcgcatcattgacaaggtgatttattcatctgataacactat |
10074772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 358 - 472
Target Start/End: Original strand, 10063946 - 10064060
Alignment:
| Q |
358 |
tgtatagttgaaacaaatggtggtagctactctatcggaatctggcatgagacttacagaagaaatgcttaatagcatcatggacaaggtgatttatcta |
457 |
Q |
| |
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||||||||| || ||| ||||||||||||||||||| ||||||| |||| |||| |||| |||||| ||||| ||||||| ||||||||||||||| || |
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| T |
10063946 |
tgtatagttaaagcaattggtggtagctactctatctgaatctgacatggaactttcagatgaaatgattaatggcatcattgacaaggtgatttattta |
10064045 |
T |
|
| Q |
458 |
tctgataacactata |
472 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
10064046 |
tctgataacaatata |
10064060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 10063712 - 10063807
Alignment:
| Q |
17 |
aatccaaagcctagttcatatgcttgtcgtaagttcctaactttcccttattacagttttattcagactgtatgatcttaaacagcaaggatatat |
112 |
Q |
| |
|
|||||||| |||| |||||||| |||| || | |||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
10063712 |
aatccaaatcctaattcatatggttgttgtgatctcctaactttcctttattacagttttattcagagtgtatgatctcaaacagcaaggatatat |
10063807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 10063853 - 10063915
Alignment:
| Q |
205 |
aatcaatgcattaatgaactatctaaaatcttgttttagattcatataggtcaagtttttgtaatt |
270 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
10063853 |
aatcaatgcattaatgaacaatct-aaatcttgttttagatt--tataggtcaagtttttgtaatt |
10063915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 12534362 - 12534395
Alignment:
| Q |
133 |
gtaatttaatttctttttatatgatgttgaataa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
12534362 |
gtaatttaatttctttttatatgatgttgaataa |
12534395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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