View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_5 (Length: 597)
Name: NF16231_low_5
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 3549721 - 3550314
Alignment:
| Q |
1 |
cttagaagctatgttggttcatattcacacacgacatttatttttacaccttaaatttttgttttctttcatcattcacagaatggaagagcaagtctag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3549721 |
cttagaagctatgttggttcatattcacacacgacatttgttttcacaccttaaatttttgttttctttcatcattcacagaatggaagagcaagtctag |
3549820 |
T |
|
| Q |
101 |
gagacataatctaccggaatattaccgatgaatttttcgatccagatcagttcctagggacaatagacatgtcatcagaacataaaattcttgatctcaa |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3549821 |
gagacataatctacaggaatattaccgatgaatttttcgatcccgatcagttcctagggacaatagacatgtcatcagaacataaaattcttgatctcaa |
3549920 |
T |
|
| Q |
201 |
gaatagaattgaggcatcaatagtgatttggaggaggaagatgaaccaaaaagattccaaatcagcatggggttctgctgtgagtttggagaaaagagaa |
300 |
Q |
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| T |
3549921 |
gaatagaattgaggcatcaatagtgatttggaggaggaagatgaaccaaaaagattccaaatcagcatggggttctgctgtgagtttggagaaaagagag |
3550020 |
T |
|
| Q |
301 |
ctctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcccggacttccacaatcttcattggatataagcaaaatccaattcaacg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3550021 |
ctctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcctggacttccacaatcttcattggatataagcaaaatccaattcaacg |
3550120 |
T |
|
| Q |
401 |
gggtaagaatatttcctgtatgcatcttgatctcttcaattacaatgttgcataaacttttggcaattcttaaaataaaatcatactattaatataacaa |
500 |
Q |
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| T |
3550121 |
gggtaagaatatttcctgcacgcatcttgatctcttcaattacaatgttgcataaacttttggcaattctcaaaataaaatcatactattaatataacaa |
3550220 |
T |
|
| Q |
501 |
gtattatcggagatgtaggcacaaccgcactttttgtttgtgtttataaatacgttttcttaagagccggattttctgttctaacaagtattat |
594 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3550221 |
gtattatcggagatgtaggcacaaccacactttttgtttgtgtttattaatacgttttcttaagagccggattttctgttctaacaagtattat |
3550314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 79 - 409
Target Start/End: Complemental strand, 43811610 - 43811280
Alignment:
| Q |
79 |
cagaatggaagagcaagtctaggagacataatctaccggaatattaccgatgaatttttcgatccagatcagttcctagggacaatagacatgtcatcag |
178 |
Q |
| |
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| T |
43811610 |
cagaatggaagagcatgtctaggggacgcagcctacaggagcattacagttgaattttttgatcctgaccagttcctatcaaccatggacctgtcatcag |
43811511 |
T |
|
| Q |
179 |
aacataaaattcttgatctcaagaatagaattgaggcatcaatagtgatttggaggaggaagatgaaccaaaaagattccaaatcagcatggggttctgc |
278 |
Q |
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| T |
43811510 |
aacataaagtcgtagatctcaagaataaaattgaagcatcaatagtgatttggaagcggaaaatgaaccaaaaagataacaaatctgcttggggttctgc |
43811411 |
T |
|
| Q |
279 |
tgtgagtttggagaaaagagaactctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcccggacttccacaatcttcattggat |
378 |
Q |
| |
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||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||| | || || || || || || |||| ||||||||||||||| |
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| T |
43811410 |
tgtaagtttggaaaaaagagagctctttgaagagagagcggaaaccatcttacttctaataaagcaccgattccctggcattcctcaatcttcattggat |
43811311 |
T |
|
| Q |
379 |
ataagcaaaatccaattcaacggggtaagaa |
409 |
Q |
| |
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||||||||||||||||||||| ||||||||| |
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| T |
43811310 |
ataagcaaaatccaattcaacagggtaagaa |
43811280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 32997303 - 32997191
Alignment:
| Q |
287 |
tggagaaaagagaactctttgaagagagagcagaaaccatcttacttctcttgaaacatcggtttcccggacttccacaatcttcattggatataagcaa |
386 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| || || | | | ||||| |||||| ||||||||||| |||||| | ||||| ||||| |
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| T |
32997303 |
tggagaagagagaactctttgaagagagagcagaaacaatattgttgatgatcaaacaagagtttccaggacttccacagtcttcacttgatatcagcaa |
32997204 |
T |
|
| Q |
387 |
aatccaattcaac |
399 |
Q |
| |
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|||||||| |||| |
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|
| T |
32997203 |
aatccaatacaac |
32997191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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