View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16231_low_9 (Length: 500)
Name: NF16231_low_9
Description: NF16231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16231_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 9e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 33557268 - 33556930
Alignment:
| Q |
1 |
tgtcaatatttgatcatcatatttacaataatctgtttcttgaagtttttcatgcttcctcgcatacacatgtgggaagaattctacgaggaaatcatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33557268 |
tgtcaatatttgatcatcatatttacaataatctgtttcttgaagtttttcatgcttcctcgcatacacatgtgggaagaattctacgaggaaatcatcc |
33557169 |
T |
|
| Q |
101 |
atggaagtaacaccacctgcgatcatcaagcaatactttcatacccttagtttaggaataatcgttcaggagaactcaaatttcaattccgactaaaaca |
200 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||| | ||||||| ||||| |||||||||||||| |||| | ||||||||| |
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| T |
33557168 |
atggaagtaacaccacctgtgaacatcaagcaatactttcatacccttagttcacgaataatagttcaagagaactcaaattttaatttcaactaaaaca |
33557069 |
T |
|
| Q |
201 |
atcctttgtcagacattatttatccttaactggactctagattatcaggagtgcattccttttgaaattgagtggttaataccaaaaaatat-----gtg |
295 |
Q |
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||| ||||||| || |||||||| | |||| || || ||||||| ||||| ||||||| ||| ||| |||||||||| | |||| || || |
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| T |
33557068 |
atcttttgtcaaactttatttattcccgactgaacattaaattatcaagagtgtgttcctttgaaaaatgaatggttaatacaataaaaaataaaaattg |
33556969 |
T |
|
| Q |
296 |
attttcaaattactacccaaaatttccctaaggggttca |
334 |
Q |
| |
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|||||||||||||| || ||||||||||||| ||||||| |
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| T |
33556968 |
attttcaaattacttcctaaaatttccctaatgggttca |
33556930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 33564485 - 33564148
Alignment:
| Q |
1 |
tgtcaatatttgatcatcatatttacaataatctgtttcttgaagtttttcatgcttcctcgcatacacatgtgggaagaattctacgaggaaatcatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33564485 |
tgtcaatatttgatcatcatatttacaataatctgtttcttgaagtttttcatgcttcctcgcatacacatgtgggaagaattctacgaggaaatcatcc |
33564386 |
T |
|
| Q |
101 |
atggaagtaacaccacctgcgatcatcaagcaatactttcatacccttagtttaggaataatcgttcaggagaactcaaatttcaattccgactaaaaca |
200 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |||| | ||||||||| |
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| T |
33564385 |
atggaagtaacaccacctgtgaacatcaagcaatactttcatacccttagtttacgaataatagttcaagagaactcaaattttaatttcaactaaaaca |
33564286 |
T |
|
| Q |
201 |
atcctttgtcagacattatttatccttaactggactctagattatcaggagtgcattccttttgaaattgagtggttaataccaaaaaatat------gt |
294 |
Q |
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||| ||||||| || |||||||| | |||| || || ||||||| ||||| ||||||| ||| | ||||||||||| | |||| || | |
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| T |
33564285 |
atcttttgtcaaactttatttattcccgactgaacattaaattatcaagagtgtgttcctttgaaaa--gtgtggttaatacaataaaaaataaaaaatt |
33564188 |
T |
|
| Q |
295 |
gattttcaaattactacccaaaatttccctaaggggttca |
334 |
Q |
| |
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| T |
33564187 |
gattttcaaattacttcctaaaatttccctaaggggttca |
33564148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 336 - 464
Target Start/End: Complemental strand, 33564111 - 33563982
Alignment:
| Q |
336 |
ttgggataaaatacgtacacatgtataatatgtgc-tattcatcaatgaaggttatataaacttttcaatttctctttgaaaatgattccctattcttat |
434 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
33564111 |
ttgggataaaatacgtacacaggtctaatatgtgcataatcatcaattaaggttatataaactgttcaatttctctttgaaaatgattccctattcctat |
33564012 |
T |
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| Q |
435 |
aaatggaaaaatcaaaatttgtattggttt |
464 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
33564011 |
aaatggcaaaatcaaaatttgtattggttt |
33563982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 336 - 464
Target Start/End: Complemental strand, 33556893 - 33556764
Alignment:
| Q |
336 |
ttgggataaaatacgtacacatgtataatatgtgc-tattcatcaatgaaggttatataaacttttcaatttctctttgaaaatgattccctattcttat |
434 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
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| T |
33556893 |
ttgggataaaatacgtacacaggtctaatatgtgcataatcatcaattaaggttatataaactcttcaatttctctttgaaaatgattccctatacctat |
33556794 |
T |
|
| Q |
435 |
aaatggaaaaatcaaaatttgtattggttt |
464 |
Q |
| |
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|||||| ||||||||||||||||||||||| |
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| T |
33556793 |
aaatggcaaaatcaaaatttgtattggttt |
33556764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 43379635 - 43379516
Alignment:
| Q |
1 |
tgtcaatatttgatcatcatatttacaataatctgtttcttgaagtttttcatgcttcctcgcatacacatgtgggaagaattctacgaggaaatcatcc |
100 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| | | | |||| |||||| ||||||||| ||||||||||||| | |||||||||| |
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| T |
43379635 |
tgtcaacatttgatcatcatatttacaataatctgtttctgccaagtgtgcatgtttcctctcatacacatttgggaagaattcttttaagaaatcatcc |
43379536 |
T |
|
| Q |
101 |
atggaagtaacaccacctgc |
120 |
Q |
| |
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|| |||||||| |||||||| |
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| T |
43379535 |
atagaagtaactccacctgc |
43379516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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