View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_high_13 (Length: 316)
Name: NF16232_high_13
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_high_13 |
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| [»] scaffold0398 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 27288008 - 27288300
Alignment:
| Q |
9 |
acatcatcagctagatttctttgaagatgatgataccatatgcctccaaagataacgtccactagccatatccacaaaagtccaaaacccagattctatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27288008 |
acatcatcagctagatttctttgaagatgatgataccatatgcctccaaagataacgtccactagccatatccacaaaagtccaaaacccagattctatc |
27288107 |
T |
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| Q |
109 |
acagcacgaacctaaaaatcatcaaatcacaaatttagggtaaatt---cnnnnnnncacatttttattaaaattgaagcgaaagggtcaaatgggtcaa |
205 |
Q |
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| T |
27288108 |
acagcacgaacctaaaaatcaacaaatcacaaatttagggtaaattaaaaaaaaaaacacatttttattaaaattgaagcaaaagggtcagatgggtcaa |
27288207 |
T |
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| Q |
206 |
ccttagaattttcatttgatgaagcatttgaagaatctgagattttagggtttgtaggagcaagatcttcatcttcatcatcgatcttaggtt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27288208 |
ccttagaattttcatttgatgaagcatttgaagaatctgaaattttagggtttgtaggagcaagatcttcatcttcatcatcgatcttaggtt |
27288300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0398 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0398
Description:
Target: scaffold0398; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 15442 - 15169
Alignment:
| Q |
9 |
acatcatcagctagatttctttgaagatgatgataccatatgcctccaaagataacgtccactagccatatccacaaaagtccaaaacccagattctatc |
108 |
Q |
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|||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |
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| T |
15442 |
acataatcagctagatttctttcaagatgaagataccatatgcctccaaagataacgaccactagccatatccaaaaaagtccaaaacccagattctaac |
15343 |
T |
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| Q |
109 |
acagcacgaacctaaaaatcatcaaatcacaaatttagggtaaattcnnnnnnncacatttttattaaaattgaagcgaaagggtcaaatgggtcaacct |
208 |
Q |
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| T |
15342 |
gcagcacgaaccta---------aaatcacaaattcagggttaattaaaaaaaacatatttttattaaaattgaagcaaaagggtgaaatgggtcaacct |
15252 |
T |
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| Q |
209 |
tagaattttcatttgatgaagcatttgaagaatctgagattttagggtttgtaggagcaagatcttcatcttcatcatcgatctta |
294 |
Q |
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| T |
15251 |
tagaattttgatttgacgaaggattagaagaatctgagattttagcgt---tagaaacagcatcttcatcatcatcatcgatctta |
15169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 43041041 - 43041252
Alignment:
| Q |
9 |
acatcatcagctagatttctttgaagatgatgataccatatgcctccaaagataacgtccactagccatatccacaaaagtccaaaacccagattctatc |
108 |
Q |
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|||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |
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| T |
43041041 |
acataatcagctagatttctttcaagatgaagataccatatgcctccaaagataacgaccactagccatatccaaaaaagtccaaaacccagattctaac |
43041140 |
T |
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| Q |
109 |
acagcacgaacctaaaaatcatcaaatcacaaatttagggtaaattcnnnnnnncacatttttattaaaattgaagcgaaagggtcaaatgggtcaacct |
208 |
Q |
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||||||||||||| |||||||||||| ||||| |||| || |||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
43041141 |
gcagcacgaaccta---------aaatcacaaattcagggttaattaaaaaaaacatatttttattaaaattgaagcaaaagggtgaaatgggtcaacct |
43041231 |
T |
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| Q |
209 |
tagaattttcatttgatgaag |
229 |
Q |
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||||||||| |||||| |||| |
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| T |
43041232 |
tagaattttgatttgacgaag |
43041252 |
T |
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