View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_high_2 (Length: 561)
Name: NF16232_high_2
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_high_2 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 514; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 17 - 546
Target Start/End: Original strand, 33301988 - 33302517
Alignment:
| Q |
17 |
aatagcaacctcttcaacttgtgcttgtgctggtgctacgacttgtgcttgcaggacatctgtttatagaggatccaaagttaaagaaacctccatttgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33301988 |
aatagcaacctcttcaacttgtgcttgtgctggtgctacgacttgtgcttgcaggacatctgtttatagaggatccaaagttaaagaaacctccatttgt |
33302087 |
T |
|
| Q |
117 |
taaataactaactataataatgtcctttaattgctttgttcgcataaacttgatttattcggatcgtgtagaaaatgaaaggggtacaatatctagcaat |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302088 |
taaataactaactataataatgtcctctaattgctttgttcgcataaacttgatttattcggatcgtgtagaaaatgaaaggggtacaatatctagcaat |
33302187 |
T |
|
| Q |
217 |
atgtggtttatacataacaaattcagaaaatatgcgatccatttcaattcattaaccaaaattcattgaggcaagcaggatttcaaaattaatataatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302188 |
atgtggtttatacataacaaattcagaaaatatgcgatccatttcaattcattaaccaaaattcattgaggcaagcaggatttcaaaattaatataatta |
33302287 |
T |
|
| Q |
317 |
agcataacctttattccttctcgagtagctactgcacttgctgtgaagtctggttctatgataacttcatcaggtccttcattcttcatagtcaacgcct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33302288 |
agcataacctttattccttctcgagtagctactgcacttgctgtgaagtctgattctatgataacttcatcaggtccttcattcttcatagtcaacgcct |
33302387 |
T |
|
| Q |
417 |
cttgtgatacgcaaaaatgttacgctaatttcttgaccaatctccatcgtcatcttcctcagctaacggtataaatacttcctcccctgcaggaagtgat |
516 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33302388 |
cttgtgatacgcaaaaatggtacgctaatttcttgaccaatctccatcgtcatcttcctcagctaacggtataaatacttcctcccctgcaagaagtgat |
33302487 |
T |
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| Q |
517 |
ataaaagtaccactcctcgtcatattcttc |
546 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33302488 |
ataaaagtaccactcctcgtcatattcttc |
33302517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 126 - 332
Target Start/End: Original strand, 33281455 - 33281656
Alignment:
| Q |
126 |
aactataataatgtcctttaattgctttgttcgcataaacttgatttattcggatcgtgtagaaaatgaaaggggtacaatatctagcaatatgtggttt |
225 |
Q |
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||||||||| ||||| || |||||||||| | ||||||| |||||| || ||||||||||||||||||||| |||||| | ||| |||||||||||||| |
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| T |
33281455 |
aactataatgatgtctttcaattgctttggttgcataaaattgattgatgcggatcgtgtagaaaatgaaatgggtactagatcatgcaatatgtggttt |
33281554 |
T |
|
| Q |
226 |
atacataacaaattcagaaaatatgcgatccatttcaattcattaaccaaaattcattgaggcaagcaggatttcaaaattaatataattaagcataacc |
325 |
Q |
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||| ||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||| || || |||||||||| |||||||||| |
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| T |
33281555 |
atatataacaaattcagaaaacatacgatcaatttcaattcattaaccaaaactcattgaggcaagcgagacttgaaaattaata-----aagcataacc |
33281649 |
T |
|
| Q |
326 |
tttattc |
332 |
Q |
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||||||| |
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| T |
33281650 |
tttattc |
33281656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 158 - 332
Target Start/End: Original strand, 33397224 - 33397393
Alignment:
| Q |
158 |
gcataaacttgatttattcggatcgtgtagaaaatgaaaggggtacaatatctagcaatatgtggtttatacataacaaattcagaaaatatgcgatcca |
257 |
Q |
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||||||| |||||| || |||||||||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||| |||| ||| | |
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| T |
33397224 |
gcataaaattgattgatccggatcgtgtagaaaatgaaaggggtactagatcatgcaatatgtggtttatatataacaaattcagaaaacatgcaatcaa |
33397323 |
T |
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| Q |
258 |
tttcaattcattaaccaaaattcattgaggcaagcaggatttcaaaattaatataattaagcataacctttattc |
332 |
Q |
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| T |
33397324 |
tttcaattcattaaccaaaattcattgaggcaagcatgacttgaaaattaata-----aagcataacctttattc |
33397393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 126 - 310
Target Start/End: Original strand, 33408103 - 33408287
Alignment:
| Q |
126 |
aactataataatgtcctttaattgctttgttcgcataaacttgatttattcggatcgtgtagaaaatgaaaggggtacaatatctagcaatatgtggttt |
225 |
Q |
| |
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|||||||| ||||| || |||||||||| | ||||||| |||||| || | || |||||||||||||||| |||||| | ||| |||||||||||||| |
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| T |
33408103 |
aactataacgatgtctttcaattgctttggttgcataaaattgattgatgcagaccgtgtagaaaatgaaatgggtactagatcatgcaatatgtggttt |
33408202 |
T |
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| Q |
226 |
atacataacaaattcagaaaatatgcgatccatttcaattcattaaccaaaattcattgaggcaagcaggatttcaaaattaata |
310 |
Q |
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||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||| ||||||||| || |||||||||| |
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| T |
33408203 |
atacataacaaattcagaaaacatgcgatcaatttcaattgattaaccaaaagtcattgagccaagcaggacttgaaaattaata |
33408287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 33385979 - 33386118
Alignment:
| Q |
108 |
tccatttgttaaataa-ctaactataataatgtcctttaattgctttgttcgcataaacttgatttattcggatcgtgtagaaaatgaaaggggtacaat |
206 |
Q |
| |
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||||| |||||||||| |||||||| || ||||| || |||||||||| | ||||||| |||||| |||||||||||||||||| |||| |||||||||| |
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| T |
33385979 |
tccatctgttaaataatctaactattatgatgtcattcaattgctttggttgcataaagttgattgattcggatcgtgtagaaattgaacggggtacaat |
33386078 |
T |
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| Q |
207 |
atctagcaatatgtggtttatacataacaaattcagaaaa |
246 |
Q |
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||| |||| ||||||||||||||||||||||| ||||| |
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| T |
33386079 |
atcatacaatctgtggtttatacataacaaattctgaaaa |
33386118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 546
Target Start/End: Original strand, 33417885 - 33417972
Alignment:
| Q |
459 |
tccatcgtcatcttcctcagctaacggtataaatacttcctcccctgcaggaagtgatataaaagtaccactcctcgtcatattcttc |
546 |
Q |
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|||| ||||||||||||||||||| |||| |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33417885 |
tccaccgtcatcttcctcagctaatggtagaaatccttcctctccttcaggaagtgatataaaagtaccactcctcgtcatattcttc |
33417972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 414 - 462
Target Start/End: Original strand, 33417808 - 33417856
Alignment:
| Q |
414 |
cctcttgtgatacgcaaaaatgttacgctaatttcttgaccaatctcca |
462 |
Q |
| |
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||||||||||||||||||| | |||||||| |||| |||||||||||| |
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| T |
33417808 |
cctcttgtgatacgcaaaactcgtacgctaacttctcgaccaatctcca |
33417856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 126 - 332
Target Start/End: Complemental strand, 12797 - 12596
Alignment:
| Q |
126 |
aactataataatgtcctttaattgctttgttcgcataaacttgatttattcggatcgtgtagaaaatgaaaggggtacaatatctagcaatatgtggttt |
225 |
Q |
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||||||||| ||||| || |||||||||| | ||||||| |||||| || ||||||||||||||||||||| |||||| | ||| |||||||||||||| |
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| T |
12797 |
aactataatgatgtctttcaattgctttggttgcataaaattgattgatgcggatcgtgtagaaaatgaaatgggtactagatcatgcaatatgtggttt |
12698 |
T |
|
| Q |
226 |
atacataacaaattcagaaaatatgcgatccatttcaattcattaaccaaaattcattgaggcaagcaggatttcaaaattaatataattaagcataacc |
325 |
Q |
| |
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||| ||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||| || || |||||||||| |||||||||| |
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| T |
12697 |
atatataacaaattcagaaaacatacgatcaatttcaattcattaaccaaaactcattgaggcaagcgagacttgaaaattaata-----aagcataacc |
12603 |
T |
|
| Q |
326 |
tttattc |
332 |
Q |
| |
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||||||| |
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|
| T |
12602 |
tttattc |
12596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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