View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_high_21 (Length: 263)
Name: NF16232_high_21
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 5023144 - 5023375
Alignment:
| Q |
19 |
cttatctggaattcctacttggttactgcaatttcctccaatactaaccagaatggttagctacttcacttctcacaacttcagttatcaaatctttgaa |
118 |
Q |
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| T |
5023144 |
cttatctggaattcctacttggttactgcaatttcctccaatactaaccagaatggttagctacttcacttctcacaacttcagttatcaaatctttgaa |
5023243 |
T |
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| Q |
119 |
gatcaatctttcaatatccaacacaacatttggtatctcattgtagcattctgtacttgtggggtgctgcaccaaatcttccaacaagatacttgtcaaa |
218 |
Q |
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| T |
5023244 |
gatcaatctttcaatatccaacacaacatttggtatctcattgtagcattctgtacttgtggggtgctgcaccaaatcttccaacaagatacttgtcaaa |
5023343 |
T |
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| Q |
219 |
tactcatcctcattagccaggttgacattcct |
250 |
Q |
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| T |
5023344 |
tactcatcctcattagccaggttgacattcct |
5023375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 157
Target Start/End: Original strand, 4557009 - 4557076
Alignment:
| Q |
90 |
ctcacaacttcagttatcaaatctttgaagatcaatctttcaatatccaacacaacatttggtatctc |
157 |
Q |
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| T |
4557009 |
ctcacaacttcagttatcaaatctttaaagatcaaccgctcaatatccaacaccatattcggtatctc |
4557076 |
T |
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