View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16232_high_22 (Length: 258)
Name: NF16232_high_22
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 37844908 - 37845152
Alignment:
| Q |
1 |
aagagtgaaataaattccttctcaagcttccaccataataactacgttgataaattcaataacagggtgatcctacctatcttgtggtagagagtgacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844908 |
aagagtgaaataaattccttctcaagcttccaccataataactactttgataaattcaataacagggtgatcctacctatcttgtggtagagagtgacag |
37845007 |
T |
|
| Q |
101 |
aacacttgcaacatttgcaattaatgccgtatgcactcacctcgggtgtgtcgtgccatttaatcaagctgagaagaagttcatctgcccctgccatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37845008 |
aacacttgcaacatttgcaattaatgccgtatgcactcacctcgggtgtgtcgtgccatttaatcaagctgagaagaagttcatctgcccctgccatgga |
37845107 |
T |
|
| Q |
201 |
tctcagtacaatgaccaaggaagagttgtgagaggacctgctcct |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37845108 |
tctcagtacaatgaccaaggaagagttgtgagaggacctgctcct |
37845152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University