View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_high_28 (Length: 220)
Name: NF16232_high_28
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_high_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37844709 - 37844492
Alignment:
| Q |
1 |
tgctgcaaccacatcattgccaacggcatcctttgctacggtaccaccagtggaagaacctgagctgtaattgttttccgagactggttaataatttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844709 |
tgctgcaaccacatcattgccaacggcatcctttgctacggtaccaccagtggaagaacctgagctgtaattgttttccgagactggttaataatttggt |
37844610 |
T |
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| Q |
101 |
agacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaacatataattagcaatatggtagactactaatagttttcttctttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37844609 |
agacgaaggaactgagtttgaagaatcataaaacttttggatagcaaatgcaacatataattagcaatatggtagactac--atagttttcttctttgat |
37844512 |
T |
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| Q |
201 |
acatcaaacttatacaatat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
37844511 |
acatcaaacttatacaatat |
37844492 |
T |
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