View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_high_30 (Length: 209)
Name: NF16232_high_30
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 32914414 - 32914221
Alignment:
| Q |
1 |
acaaatttatagtatccagatatacataggcatccctcaatactcagaaatggcatacaaagatctgttgtttatatttgtcaatggtagtatagtaacc |
100 |
Q |
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| T |
32914414 |
acaaatttatagtatccagatatacataggcatccctcaatactcagaaatggcatacaaagatctgttgtttatatttgtcaatggtagtaaagtaacc |
32914315 |
T |
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| Q |
101 |
agataggtctattagatttgattcatttcnnnnnnncaaatataaaattcacaacattgttgcagtacacaaatgataacataatcaataaatg |
194 |
Q |
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| T |
32914314 |
aggtaggtctattagatttgattcatttctttttttcaaatataaaattcacaacattgttgcagtacacaaatgataacataatcaataaatg |
32914221 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 8601535 - 8601481
Alignment:
| Q |
37 |
tcaatactcagaaatggcatacaaagatctgttgtttatatttgtcaatggtagt |
91 |
Q |
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| T |
8601535 |
tcaatactcagaaatggcatagaaagatgtgttgtttttatctgtcaatagtagt |
8601481 |
T |
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