View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16232_high_6 (Length: 436)

Name: NF16232_high_6
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16232_high_6
NF16232_high_6
[»] chr5 (6 HSPs)
chr5 (19-431)||(43322593-43322998)
chr5 (157-208)||(40549293-40549344)
chr5 (153-208)||(42783259-42783314)
chr5 (113-207)||(42564928-42565022)
chr5 (156-226)||(42840513-42840583)
chr5 (159-223)||(42629633-42629697)
[»] chr1 (2 HSPs)
chr1 (152-226)||(51874705-51874779)
chr1 (144-226)||(368801-368883)
[»] chr2 (1 HSPs)
chr2 (239-284)||(44141526-44141571)
[»] scaffold0129 (1 HSPs)
scaffold0129 (153-226)||(33548-33621)
[»] chr3 (1 HSPs)
chr3 (165-226)||(44550492-44550553)
[»] scaffold0054 (1 HSPs)
scaffold0054 (156-228)||(39820-39892)
[»] chr6 (1 HSPs)
chr6 (158-226)||(32960737-32960805)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 43322998 - 43322593
Alignment:
Q  19 cctttaacaccaatctcatcaattatttgagtgattaaatcaacccagaccagatcatcatcnnnnnnnnnnnnnnnnnaaagcaaatgttgcacttctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                  ||||||||||| | ||||||    
T  43322998 cctttaacaccaatctcatcaattatttgagtgattaaatcaacccacaccagatcatcatcttttttttttg-------aagcaaatgttacccttctt 43322906  T
Q  119 cccaactccaattggacgatgaatgaaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatga 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43322905 cccaactccaattggacgatgaatgaaaggtatgggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatga 43322806  T
Q  219 aaagtagtagcatctggacaatttgagattaaagcaattgactcatttaacaccaccaaacatctctcaatggaataataatcacaactttcatccacat 318  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43322805 aaagtagtagcatttggacaatttgagattaaagcaattgactcatttaacaccaccaaacatctctcaatggaataataataacaactttcatccacat 43322706  T
Q  319 ctaacaacataggtgttgtgaaaaacaactcgttgacgaagtcaaatgacaccaaacagtcttctttatcatgtgatgaactgctgctccaccaatgaca 418  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43322705 ctaacaacataggtgttgtgaaaaacaactagttgacgaagtcaaatgacaccaaacagtcttctttatcatgtgatgaactgttgctccaccaatgaca 43322606  T
Q  419 cactccatctgtg 431  Q
    |||||||| ||||    
T  43322605 cactccatttgtg 43322593  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 40549344 - 40549293
Alignment:
Q  157 caacaataaagagtttgatccataatttctttacaccgagttcacccaaaat 208  Q
    |||||| |||||||||||||||| ||| ||| ||||||| ||||||||||||    
T  40549344 caacaacaaagagtttgatccatgattccttcacaccgacttcacccaaaat 40549293  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 42783314 - 42783259
Alignment:
Q  153 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaat 208  Q
    |||||||||||||||||||| |||||| |||  |||||||  ||||||||||||||    
T  42783314 ggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaat 42783259  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 42564928 - 42565022
Alignment:
Q  113 cttcttcccaactccaattggacgatgaatgaaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaa 207  Q
    |||||| || |||||||| |||  ||||| | |||| | ||| |||||||| || |||||||||||| ||| ||| ||||| |||||||||||||    
T  42564928 cttctttcccactccaataggaatatgaacgcaaggcagtggtccaacaatgaaaagtttgatccatgattccttgacacctagttcacccaaaa 42565022  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 42840513 - 42840583
Alignment:
Q  156 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 226  Q
    ||||||||||||| |||  ||||| |||  |||||||| |||||||||||||| ||||| ||||| |||||    
T  42840513 ccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaatgtagt 42840583  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 42629633 - 42629697
Alignment:
Q  159 acaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagt 223  Q
    |||||||| |||||||||||| | | ||| || |||| |||||||||||| || |||||||||||    
T  42629633 acaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaaagt 42629697  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 51874705 - 51874779
Alignment:
Q  152 tggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 226  Q
    |||||||||||  || |||||||||||| ||| ||| ||||  |||||||||||||| ||||||| |||||||||    
T  51874705 tggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagt 51874779  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 368883 - 368801
Alignment:
Q  144 aaaggtattggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 226  Q
    ||||||| ||| |||||||| ||||||||||||||| ||| ||| ||||| | |||||| | ||| || || |||||||||||    
T  368883 aaaggtaatggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 44141526 - 44141571
Alignment:
Q  239 atttgagattaaagcaattgactcatttaacaccaccaaacatctc 284  Q
    ||||||||| |||||||||||| ||||||||||||||||| |||||    
T  44141526 atttgagatcaaagcaattgacccatttaacaccaccaaatatctc 44141571  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 33548 - 33621
Alignment:
Q  153 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 226  Q
    ||||||| ||||||||||||  ||||  | | ||| ||||| |||||||||||||| ||||| |||||||||||    
T  33548 ggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaaagtagt 33621  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 44550492 - 44550553
Alignment:
Q  165 aagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 226  Q
    ||||||||  ||||||||||||| ||||||| |||||| ||||| || || |||||||||||    
T  44550492 aagagtttagtccataatttcttcacaccgaattcacctaaaattgatatttgaaaagtagt 44550553  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 39820 - 39892
Alignment:
Q  156 ccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagtag 228  Q
    |||||| ||||||||||||||||  ||| ||| |  ||||||||||||||||| |  || |||||||||||||    
T  39820 ccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaagtagtag 39892  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 32960737 - 32960805
Alignment:
Q  158 aacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 226  Q
    |||||||||||||||||||||  ||| ||| | ||||| |||| ||||||| || | ||||||||||||    
T  32960737 aacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaaaagtagt 32960805  T

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