View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16232_high_9 (Length: 374)

Name: NF16232_high_9
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16232_high_9
NF16232_high_9
[»] chr6 (8 HSPs)
chr6 (23-359)||(15522941-15523295)
chr6 (72-355)||(15493354-15493649)
chr6 (28-168)||(31012531-31012671)
chr6 (29-207)||(31001980-31002155)
chr6 (23-153)||(30958718-30958848)
chr6 (84-288)||(31211957-31212161)
chr6 (28-139)||(30663988-30664099)
chr6 (23-228)||(31221760-31221965)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 15523295 - 15522941
Alignment:
Q  23 ttctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaagtctatgttctcc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15523295 ttctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcc 15523196  T
Q  123 taaatttaatgatacttatttgtttccacctttgtttcaatatcctcaaaatgttaaaaacctttccatatactacaattgtacttccactatctctcaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15523195 taaatttaatgatacttatttgtttccacctttgtttcaatatccccaaaatgttaaaaacctttccatatactacaattgtacttccactatctctcaa 15523096  T
Q  223 gatttagcagaaaattctgtttgtggatcacactatccttcttttggctatgttggaaatgaagataagttgtttgaaga------------------ag 304  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||                  ||    
T  15523095 gatttagcagaaaattctgtttgtggatctcactatccttcttttggctatgtcggaaatgaagataagttgtttgaagaagataagttgtttgaagaag 15522996  T
Q  305 atccgtctctgagatgtcagaaacatatcaaagtgccggtaggatcatattttct 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15522995 atccgtctctgagatgtcagaaacatatcaaagtgccggtaggatcatattttct 15522941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 72 - 355
Target Start/End: Original strand, 15493354 - 15493649
Alignment:
Q  72 ccacatcatcaaactcaaaagaacagaccttgatcaaagtctatgttctcctaaatttaatgatacttatttgtttccacctttgtttcaatatcctcaa 171  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| | ||| ||||||| | |    
T  15493354 ccacattatcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaatttcatgatacttatttgtctccacctctctttaaatatccccca 15493453  T
Q  172 aatgttaa--aaacc-tttccatatactacaattgtac---------ttccactatctctcaagatttagcagaaaattctgtttgtggatcacactatc 259  Q
    | ||| ||  | ||| |  |||||||||||||||||||         ||||||| |||||||| |||||||  |||||||  | || ||||| |||  ||    
T  15493454 agtgtcaaccacaccatcaccatatactacaattgtacttccaaaagttccactgtctctcaatatttagctaaaaattcaatatgcggatctcacagtc 15493553  T
Q  260 cttcttttggctatgttggaaatgaagataagttgtttgaagaagatccgtctctgagatgtcagaaacatatcaaagtgccggtaggatcatatt 355  Q
    ||||| |  |  |||| ||  |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||  ||||| ||||||    
T  15493554 cttctctcagtcatgtcggcgatgaagataagttgtttgaagaagatccttctctgaaatgtcagaaacatatcaaagtgccaataggagcatatt 15493649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 31012531 - 31012671
Alignment:
Q  28 ttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaagtctatgttctcctaaat 127  Q
    |||| ||||||||| |||||||||||||| || ||||   || | |||| ||| |||||||||||||||||||||||||||| ||| ||||||||| |||    
T  31012531 ttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat 31012630  T
Q  128 ttaatgatacttatttgtttccacctttgtttcaatatcct 168  Q
     ||||||||||||||||||||||||| ||||||||||||||    
T  31012631 ataatgatacttatttgtttccacctctgtttcaatatcct 31012671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 207
Target Start/End: Original strand, 31001980 - 31002155
Alignment:
Q  29 tatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaagtctatgttctcctaaatt 128  Q
    ||||||||||||||||||| |||||||| || ||||  ||| | |||| ||| ||||| |||||||||||||||   |||| ||| ||||||||||| ||    
T  31001980 tatcctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacctt---caaaatctttgttctcctaagtt 31002076  T
Q  129 taatgatacttatttgtttccacctttgtttcaatatcctcaaaatgttaaaaacctttccatatactacaattgtact 207  Q
    |  |||||||||||||||||||||| |||||||||||| || |||||| | |||| |  | |||||||| |||||||||    
T  31002077 tgttgatacttatttgtttccacctatgtttcaatatcttcgaaatgtcataaacatcacaatatactataattgtact 31002155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 30958718 - 30958848
Alignment:
Q  23 ttctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaagtctatgttctcc 122  Q
    |||| ||||||||||||||||| ||||||||||| || ||||   ||   |||| ||| ||||| |||||||||||||||||||||| ||| ||||||||    
T  30958718 ttctgttatcctcacaaaatttaacagtacttgacatcaacatagaaacacacaccatgaaactaaaaagaacagaccttgatcaaaatctttgttctcc 30958817  T
Q  123 taaatttaatgatacttatttgtttccacct 153  Q
    | ||| |||| ||||||||||||||||||||    
T  30958818 tcaatataattatacttatttgtttccacct 30958848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 288
Target Start/End: Original strand, 31211957 - 31212161
Alignment:
Q  84 actcaaaagaacagaccttgatcaaagtctatgttctcctaaatttaatgatacttatttgtttccacctttgtttcaatatcctcaaaatgttaaaaac 183  Q
    |||||||||||| |||||    |||| ||| ||| ||||| | ||| |||| |||||||||| |||| |||||||||||||||| |||||||| || |||    
T  31211957 actcaaaagaactgacctatcccaaaatctttgtgctcctcagtttgatgaaacttatttgtctccaactttgtttcaatatccacaaaatgtcaacaac 31212056  T
Q  184 ctttccatatactacaattgtacttccactatctctcaagatttagcagaaaattctgtttgtggatcacactatccttcttttggctatgttggaaatg 283  Q
     |  ||||| |||| ||||||| ||||||| |||||||| || ||   ||||||||| | |||||||||||| | ||||||||| | ||| |||| ||||    
T  31212057 atcaccatacactataattgtagttccactgtctctcaatatatacttgaaaattctctatgtggatcacacgacccttctttttgttatattggtaatg 31212156  T
Q  284 aagat 288  Q
    |||||    
T  31212157 aagat 31212161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 30664099 - 30663988
Alignment:
Q  28 ttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaagtctatgttctcctaaat 127  Q
    |||| ||||||||||||||  |||||| | |||||||  | | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||    
T  30664099 ttatactcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaat 30664000  T
Q  128 ttaatgatactt 139  Q
    || |||||||||    
T  30663999 ttgatgatactt 30663988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 228
Target Start/End: Original strand, 31221760 - 31221965
Alignment:
Q  23 ttctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaagtctatgttctcc 122  Q
    |||| ||||| |||||||||||||||||||||||||| |||    ||   |||| ||||||||| || ||||||||||||   |||| | | ||||||||    
T  31221760 ttctattatcatcacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctttcccaaaatttttgttctcc 31221859  T
Q  123 taaatttaatgatacttatttgtttccacctttgtttcaatatcctcaaaatgttaaaaacctttccatatactacaattgtacttccactatctctcaa 222  Q
    | |||  ||||||||||  |||| |||| |  | ||||| || |  | || ||| |||| | |   |||||||||||||||||||| || | ||||||||    
T  31221860 tcaatacaatgatactttcttgtctccaacaatatttcagtacctcccaagtgtcaaaatcatagacatatactacaattgtacttacaatgtctctcaa 31221959  T
Q  223 gattta 228  Q
    ||||||    
T  31221960 gattta 31221965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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