View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_low_18 (Length: 303)
Name: NF16232_low_18
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 8947467 - 8947192
Alignment:
| Q |
11 |
agaatatatagcttgaagggtttgaacataagtttaagctgtaactgttacacaatatgcctgcttccatttctcctgttccacaacatccttcgtctac |
110 |
Q |
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| T |
8947467 |
agaatatatagcttgaagggtttgaacataagtttaagctgtaactgttacacaatatgcctgcttccatttctcctgttccacaacatccttcgtctac |
8947368 |
T |
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| Q |
111 |
tacttcaaagcctaaaccatgcaaccaagtacaatgagaaattaatcagacataaggaaaaacaccaatcaaagtagtttttgaatgtaatgtcaactaa |
210 |
Q |
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| T |
8947367 |
tacttcaaagcctaaaccatgcaaccaagtacaatgagaaattaatcagacataaggaaaaacaccaatcaaagtagtttttgaatgtaatgtcaactaa |
8947268 |
T |
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| Q |
211 |
tttcttatactttgtggtgaatatcatgtattattggcatctaagcactcacaatggtataactgtccaataatat |
286 |
Q |
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| T |
8947267 |
tttcttatactttgtggtgaatatcatgtattattggcatctaagcactcacaatggtataactgtccaataatat |
8947192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 8940539 - 8940400
Alignment:
| Q |
11 |
agaatatatagcttgaagggtttgaacataagtttaagctgtaactgttacacaatatgcctgcttccatttctcctgttccacaacatccttcgtctac |
110 |
Q |
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| T |
8940539 |
agaatatatagcttgaagggtttgaacatatgtttgagctgtaatggttgcacaatatgcttacttctatgtttcctgttccacaacatcctttatctgc |
8940440 |
T |
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| Q |
111 |
tacttcaaagcctaaaccatgcaaccaagtacaatgagaaat |
152 |
Q |
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| T |
8940439 |
tacttcaaaacct-aaccatgc-accaaatacaatgagaaat |
8940400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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