View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_low_19 (Length: 296)
Name: NF16232_low_19
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 56312652 - 56312375
Alignment:
| Q |
1 |
atcgttcggtttcatgttggggtaatctatactcattcataatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56312652 |
atcgttcggtttcatgttggggtaatctatactcattcataatccaactggttcggatgcctttaggagcttttccagaatagaaaactagggttttctt |
56312553 |
T |
|
| Q |
101 |
gagtccaattgaacggaagttttcagttcgaatcatcctatctgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgttt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56312552 |
gagtccaattgaacggaagttttcagttcgaatcatcctatccgctcctgttgccttccaataaccagaagttgttacacgatttggacgatcaccgttt |
56312453 |
T |
|
| Q |
201 |
cgatacttcctatctcgaggcacataaaagtaccactccttctctccgattgctgccaaagctgctcatcatcatcat |
278 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56312452 |
cgatacttcctatctcgaggcacataaaagtaccactccttctctccgattgctgccaaagctgctcatcatcatcat |
56312375 |
T |
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