View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16232_low_2 (Length: 579)
Name: NF16232_low_2
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 564
Target Start/End: Original strand, 349498 - 350049
Alignment:
| Q |
16 |
caccaactatattttttgaattgtccattttgtcccttcaccaaccacgaccaccttttaaccaatttccatgtggctggct----acattcacatcacc |
111 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
349498 |
caccaactatatttattgaattgtccattttgtcccttcaccaaccacgaccaccttttaaccaatttccatgtggctggctggctacattcacatcacc |
349597 |
T |
|
| Q |
112 |
ttagccataacaagtcctatattacacaaagtgtagttcttgttctttctcaagagaaaaattgaaatcaacaacaatattcattctctttaagcaaaca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
349598 |
ttagccataacaagtcctatattacacaa-gtgaagttcttgttctttctcaagagaataattgaaatcatcaacaatattcattctctttaagcaaaca |
349696 |
T |
|
| Q |
212 |
ataacattctaatgactatccaaacaatggaacaagagttcattttcaagtctaagcttcctgatatttacattcccaaacaccttcctcttcattcata |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
349697 |
ataacattctaatgactatccaaacaatggaacaagagttgattttcaagtctaagcttcctgatatttacattcccaaacaccttcctcttcattcata |
349796 |
T |
|
| Q |
312 |
ttgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgcaccaactggtgaaatttacacctactatgatgtcgaactcaccgcgcaa |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
349797 |
ttgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgctccaactgctgaaatttacacctactatgatgtccaactcaccgcgcaa |
349896 |
T |
|
| Q |
412 |
aaagtcgcctccggtctcaacaaacttggcatccaacagggggatgtcatcatggtacttctccctaattgcccggaatttgtgttcgcctttctcggtg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
349897 |
aaagtcgcctccggtctcaacaaacttggcatccaacagggggatgtcatcatggttcttctccctaattgcccggaatttgtgttcgcctttctcggtg |
349996 |
T |
|
| Q |
512 |
cttcttttcgcggcgccataatgactgccgccaatcccttcttcacttcagct |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
349997 |
cttcttttcgcggcgccataatgactgccgccaatcccttcttcacttcagct |
350049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 557
Target Start/End: Original strand, 45521059 - 45521315
Alignment:
| Q |
301 |
cttcattcatattgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgcaccaactggtgaaatttacacctactatgatgtcgaac |
400 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||| ||||||||||| || ||||||||||| || || || | | ||||||||| | || ||| ||| |
|
|
| T |
45521059 |
cttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccaccggaaaggtctacacctaccacgacgtccaac |
45521158 |
T |
|
| Q |
401 |
tcaccgcgcaaaaagtcgcctccggtctcaacaaacttggcatccaacagggggatgtcatcatggtacttctccctaattgcccggaatttgtgttcgc |
500 |
Q |
| |
|
||||| | | ||||| ||||| ||||| ||||| | || ||||||| || || ||||||||| | || || || |||| ||| ||||| || ||| | |
|
|
| T |
45521159 |
tcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtgaagtcatcatgatcctccttcccaattcccctgaattcgtcttctc |
45521258 |
T |
|
| Q |
501 |
ctttctcggtgcttcttttcgcggcgccataatgactgccgccaatcccttcttcac |
557 |
Q |
| |
|
|||||| | |||||||| || |||||| || ||||| |||||||| |||||||| |
|
|
| T |
45521259 |
ctttcttgctgcttcttatctcggcgctgtagccactgcagccaatcctttcttcac |
45521315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University