View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_low_20 (Length: 295)
Name: NF16232_low_20
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 35909249 - 35908983
Alignment:
| Q |
19 |
atgtagtgggatacaaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
118 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| | || ||||| |||| ||||| |
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| T |
35909249 |
atgtggtgggatacaaaggattgacatttgtgacagtaagaggagcaggacatcttgttccaagctggcagccagaaagggcattgacaatgatatcatc |
35909150 |
T |
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| Q |
119 |
gttcctctatggaagtttgcctcctagttcaccatcaaattaattggttctaagcatgatccatg-------tttacttccatgaaatgaatgcactttg |
211 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |
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| T |
35909149 |
attcctctatggaagtctgcttcctagttcaccatcaaattaattggttctaagcatgatccttgtttcaaatttacttccatgaaataaatgcactttg |
35909050 |
T |
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| Q |
212 |
ttcaaagtctactagttagattgtaataataaaagaattagtttgaactttcaattaaaaagttttgtt |
280 |
Q |
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| T |
35909049 |
tgcaaaatctactagttagattgtaat-attaaagaattagtttgaactttcactt-aaaagttttgtt |
35908983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 35913646 - 35913392
Alignment:
| Q |
19 |
atgtagtgggatacaaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35913646 |
atgtggtgggatacaaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
35913547 |
T |
|
| Q |
119 |
gttcctctatggaagtttgcctcctagttcaccatcaaattaattggttctaagcatgatccatg-------tttacttccatgaaatgaatgcactttg |
211 |
Q |
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| T |
35913546 |
attcctatatggaatcctgcctcctgcttcaccatcaaattaaagggttctgagcatgatcaatgtttcaaatttacttccttga----aatgcactctg |
35913451 |
T |
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| Q |
212 |
ttcaaagtctactagttagattgtaataataaaagaattagtttgaactttcaattaaa |
270 |
Q |
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| || | |||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
35913450 |
tgcataatctactagttagattgtaataaaaaaaaaattagtttgaactttcaattaaa |
35913392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 35920039 - 35919872
Alignment:
| Q |
19 |
atgtagtgggatacaaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
118 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35920039 |
atgttgtgggatacaaaggattgacatttgttacagtgagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
35919940 |
T |
|
| Q |
119 |
gttcctctatggaagtttgcctcctagttcaccatcaaattaattggttctaagcatgatccatgttt |
186 |
Q |
| |
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||||||||||||| ||||| || ||||||| || ||||||| |||| | |||||||||||||||| |
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| T |
35919939 |
attcctctatggaatcctgccttctggttcaccgtcgaattaatgggttttcagcatgatccatgttt |
35919872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 35926618 - 35926362
Alignment:
| Q |
19 |
atgtagtgggatacaaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
118 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35926618 |
atgtggtgggatacaaaggattaacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacccgaacgtgctttgactttgatctcatc |
35926519 |
T |
|
| Q |
119 |
gttcctctatggaagtttgc---ctcctagttcaccatcaaattaattggttctaagcatga-------tccatgtttacttccatgaaatgaatgcact |
208 |
Q |
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|||||||||||||| ||| || || |||||||||||| |||||| |||||||||||| | || ||||||||| ||| |||||||| |
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| T |
35926518 |
attcctctatggaagcctgcctgcttctgtttcaccatcaaactaattgtttctaagcatgattcacttttcagatttacttccttga----aatgcact |
35926423 |
T |
|
| Q |
209 |
ttgttcaaagtctactagttagattgtaataataaaagaattagtttgaactttcaattaaa |
270 |
Q |
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|||| |||| |||||||||||||||||||||| | || | | ||||||||||||||| |||| |
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| T |
35926422 |
ttgtgcaaaatctactagttagattgtaataa-acaaaattcagtttgaactttcaactaaa |
35926362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 35939098 - 35938936
Alignment:
| Q |
19 |
atgtagtgggatacaaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
118 |
Q |
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|||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35939098 |
atgtggtgggatacaaaggattaacatttgttacagtgagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
35938999 |
T |
|
| Q |
119 |
gttcctctatggaagtttgc---ctcctagttcaccatcaaattaattggttctaagcatgat |
178 |
Q |
| |
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||||||||||||| ||| || || |||||||||||| |||||| ||||||||||||| |
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| T |
35938998 |
attcctctatggaatcctgcctgcttctgtttcaccatcaaactaattgtttctaagcatgat |
35938936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 35933439 - 35933287
Alignment:
| Q |
19 |
atgtagtgggatacaaaggattgacatttgttacagtaagaggagcaggacatcttgttccaagctggcaacctgaacgtgctttgactttgatctcatc |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| | || ||||| |||| ||||| |
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| T |
35933439 |
atgtggtgggatacaaaggattgacatttgtgacagtaagaggagcaggacatcttgttccaagctggcagccagaaagggcattgacaatgatatcatc |
35933340 |
T |
|
| Q |
119 |
gttcctctatggaagtttgcctcctagttcaccatcaaattaattggttctaa |
171 |
Q |
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||||||||||||||| ||| ||||| |||||||||||| |||| |||||||| |
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| T |
35933339 |
attcctctatggaagtctgcttcctacttcaccatcaaaataatgggttctaa |
35933287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 226 - 277
Target Start/End: Original strand, 21285257 - 21285308
Alignment:
| Q |
226 |
gttagattgtaataataaaagaattagtttgaactttcaattaaaaagtttt |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21285257 |
gttagattgtaataataaaagaattagtttgaactttcaattaaaaagtttt |
21285308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 176
Target Start/End: Original strand, 38517860 - 38517957
Alignment:
| Q |
80 |
aagctggcaacctgaacgtgctttgactttgatctcatcgttcctctatggaagtttgcctcctagttcaccatcaaattaattgg-ttctaagcatg |
176 |
Q |
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||||| |||||||||| | | ||||| | |||||||||| |||||||||||||||||| ||||| |||||||||||||||| || ||||||||||| |
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| T |
38517860 |
aagctagcaacctgaatgagttttgagtgtgatctcatcattcctctatggaagtttgtctcctgcctcaccatcaaattaatgggtttctaagcatg |
38517957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 2558810 - 2558722
Alignment:
| Q |
99 |
gctttgactttgatctcatcgttcctctatggaagtttgcctcctagttcaccatcaaattaattgg-ttctaagcatgatccatgttt |
186 |
Q |
| |
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|||||||| ||||||| |||||||||| ||||||||||| |||| |||||| ||||||||| || ||||||||||||| ||||||| |
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| T |
2558810 |
gctttgacggtgatctcgtcgttcctctttggaagtttgcttcctgcctcaccaacaaattaatgggtttctaagcatgatgcatgttt |
2558722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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