View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_low_21 (Length: 294)
Name: NF16232_low_21
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 2708654 - 2708531
Alignment:
| Q |
19 |
ggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaatgtttagcac |
118 |
Q |
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| T |
2708654 |
ggtttgtctggtagcctatcaatatacaagttgaagcatagtgcagacaaggtatatattctgttgattgtgtgaacagacaatagttaatgttaagcac |
2708555 |
T |
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| Q |
119 |
taatgcaaatgtttgtatattgtt |
142 |
Q |
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| T |
2708554 |
taatgcaaatgtttgtatattgtt |
2708531 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 2702715 - 2702663
Alignment:
| Q |
19 |
ggtttgtctcgtagcctatcaatatacaagttgaagcatagtgcagacaaggt |
71 |
Q |
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|||||||||| ||||||||||| ||||||||||||| |||||||||||||| |
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| T |
2702715 |
ggtttgtctcatagcctatcaagatacaagttgaagttcagtgcagacaaggt |
2702663 |
T |
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