View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16232_low_22 (Length: 292)
Name: NF16232_low_22
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 95 - 266
Target Start/End: Complemental strand, 887467 - 887296
Alignment:
| Q |
95 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataattacttaattagaggatcataaaatcaaag |
194 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
887467 |
ttcgaatagcaagcatatatttccttttctctgaaaattaaggatatatagctagcatgttagtatataattacttaattagaggatcataaaatcaaag |
887368 |
T |
|
| Q |
195 |
gtagcttaataaaaaggtgctcaccgacagttttatataatgtttaactagtaattcaaacttcacattgtt |
266 |
Q |
| |
|
||||||| | ||||||||||||||||| || |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
887367 |
gtagcttcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttcacattgtt |
887296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 31880610 - 31880668
Alignment:
| Q |
159 |
atataattacttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31880610 |
atataattatttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
31880668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 887522 - 887488
Alignment:
| Q |
46 |
tttctttactacctcctatcacattattatcatca |
80 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
887522 |
tttctttactacctcctatcacattatcatcatca |
887488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 31900142 - 31900074
Alignment:
| Q |
95 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataat |
165 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31900142 |
ttcgattagcaaacatat--ttcctttactctgaaaattaaggatatatagctagcatgttagtatataat |
31900074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University