View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_low_23 (Length: 290)
Name: NF16232_low_23
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 3346671 - 3346936
Alignment:
| Q |
10 |
attattctgcacgtagtaatagtctctgatattcggttaacatctacttatgagtgannnnnnngcaagtatataacattataaaaagtttcttgcaaaa |
109 |
Q |
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| T |
3346671 |
attattctgcaagtagtaatagtctctgatattcggttaacatctacttatgagtgatttttttgcaagtatataacattataaaaagtttcttgcaaaa |
3346770 |
T |
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| Q |
110 |
ttttgaatagtagtttcattttttaagctagttttatcttaaaattttgacatataaacannnnnnnnnnnatgc-accaaatgatcgtaaatggtctag |
208 |
Q |
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| T |
3346771 |
ttttgaatagtagtttcattttttaagctagttttatcttaaaattttaacatataaaca-ttttttttttatgcgaccaaatgattgtaaatggtcaag |
3346869 |
T |
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| Q |
209 |
tattttctctaaataaaaacaaagtaaggatattannnnnnnngaacaagcaactaaggttattatt |
275 |
Q |
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| T |
3346870 |
tattttctctaaataaaaacaaagtaaggatattattttttttgaacaagcaactaaggttattatt |
3346936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 3331474 - 3331709
Alignment:
| Q |
13 |
attctgcacgtagtaatagtctctgatattcggttaacatctacttatgagtgannnnnnngcaagtatataacattataaaaagtttcttgcaaaat-- |
110 |
Q |
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| T |
3331474 |
attctgcacgtagtaatagtctctgatattcggttaacatctacttatgagtgatttttttgcaagtata--acattataaaaagtttcttgcaaaataa |
3331571 |
T |
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| Q |
111 |
----------tttgaatagtagtttcattttttaagctagttttatcttaaaattttgacatataaacannnnnnnnnnnatgcaccaaatgatcgtaaa |
200 |
Q |
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| T |
3331572 |
agctcaaaattttgaatagtagtttcatttttaaagctagttttatcttaaaattttgatatagaaacatttttttttatgcgc-ccaaatgattgtaaa |
3331670 |
T |
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| Q |
201 |
tggtctagtattttctctaaataaaaacaaagtaaggatat |
241 |
Q |
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| T |
3331671 |
cggtcaagtattttctctaaat--aaacaaagtaaggatat |
3331709 |
T |
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