View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16232_low_3 (Length: 577)

Name: NF16232_low_3
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16232_low_3
NF16232_low_3
[»] chr2 (2 HSPs)
chr2 (147-309)||(14240481-14240643)
chr2 (22-119)||(14240356-14240453)
[»] chr4 (2 HSPs)
chr4 (22-113)||(49946161-49946252)
chr4 (483-531)||(29969277-29969325)
[»] chr6 (2 HSPs)
chr6 (22-119)||(16728764-16728861)
chr6 (443-552)||(16728135-16728244)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 8e-75; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 147 - 309
Target Start/End: Original strand, 14240481 - 14240643
Alignment:
Q  147 gttcccgctttgggaaagtgaaaacaagagcaaaccatcattttaggagcttaatgtgttgttgtcataatgatcctaaacttcaattaaaatcagttaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14240481 gttcccgctttgggaaagtgaaaacaagagcaaaccatcattttaggagcttaatgtgtagttgtcataatgatcctaaacttcaattaaaatcagttaa 14240580  T
Q  247 attatcttcgatctttttagttattttaatccttgatattaagaatgataaaatgttcatgtg 309  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  14240581 attatcttcaatctttttagttattttaatccttgacattaataatgataaaatgttgatgtg 14240643  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 14240356 - 14240453
Alignment:
Q  22 gtcggagatttctgttacgatgcgggagattgtttcgttgtccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttatttaagc 119  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14240356 gtcggagatttctgttacgatgcgggagattgtttcgtcgtccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttattgaagc 14240453  T

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Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 49946252 - 49946161
Alignment:
Q  22 gtcggagatttctgttacgatgcgggagattgtttcgttgtccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttat 113  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49946252 gtcggagatttctgttacgatgcgggagattgtttcgtcgtccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttat 49946161  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 531
Target Start/End: Complemental strand, 29969325 - 29969277
Alignment:
Q  483 tatattatttgtgagagtgattgtttgtaagtgcttgagttgtttgttg 531  Q
    ||||||||||||||||||||||||||| ||| | || | ||||||||||    
T  29969325 tatattatttgtgagagtgattgtttggaagcggttaaattgtttgttg 29969277  T

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Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 16728861 - 16728764
Alignment:
Q  22 gtcggagatttctgttacgatgcgggagattgtttcgttgtccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttatttaagc 119  Q
    |||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16728861 gtcggagatttctgttataatgcgggagattgtttcgtcgtccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttattgaagc 16728764  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 552
Target Start/End: Complemental strand, 16728244 - 16728135
Alignment:
Q  443 ttcatgaatctttgatttttgttgcactagaggctttagctatattatttgtgagagtgattgtttgtaagtgcttgagttgtttgttgttgactgtgat 542  Q
    ||||||| | ||||| | ||||||||| | ||||| ||||||||||||||||||||||||||| ||| ||    |||||||||||||||||||  ||||     
T  16728244 ttcatgagtttttgaatcttgttgcaccaaaggctatagctatattatttgtgagagtgattgcttggaaacaattgagttgtttgttgttgatcgtgac 16728145  T
Q  543 gataccttgc 552  Q
     |||||||||    
T  16728144 cataccttgc 16728135  T

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