View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16232_low_33 (Length: 225)

Name: NF16232_low_33
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16232_low_33
NF16232_low_33
[»] chr8 (15 HSPs)
chr8 (90-225)||(32914620-32914755)
chr8 (1-62)||(16383411-16383473)
chr8 (1-58)||(16056405-16056463)
chr8 (16-62)||(1179960-1180006)
chr8 (1-58)||(24307797-24307855)
chr8 (1-62)||(34307250-34307312)
chr8 (1-62)||(37038513-37038575)
chr8 (13-62)||(5957864-5957913)
chr8 (1-57)||(32032763-32032820)
chr8 (23-62)||(10621114-10621153)
chr8 (28-62)||(12831081-12831115)
chr8 (28-62)||(15197367-15197401)
chr8 (1-62)||(34012300-34012362)
chr8 (1-62)||(40423947-40424009)
chr8 (1-62)||(43414585-43414647)
[»] chr7 (14 HSPs)
chr7 (13-79)||(27744326-27744392)
chr7 (1-62)||(22343395-22343457)
chr7 (1-62)||(41915775-41915837)
chr7 (1-52)||(35522920-35522972)
chr7 (1-62)||(32564430-32564492)
chr7 (1-62)||(38044231-38044293)
chr7 (1-52)||(3694411-3694463)
chr7 (1-55)||(3784036-3784091)
chr7 (15-58)||(16374843-16374886)
chr7 (23-62)||(46374829-46374868)
chr7 (1-62)||(3434596-3434658)
chr7 (1-62)||(8238247-8238309)
chr7 (13-55)||(19436204-19436246)
chr7 (28-62)||(38267074-38267108)
[»] chr6 (11 HSPs)
chr6 (1-62)||(4231582-4231644)
chr6 (1-62)||(15508028-15508090)
chr6 (1-62)||(15990046-15990108)
chr6 (1-62)||(30341364-30341426)
chr6 (13-55)||(12732523-12732565)
chr6 (15-58)||(9379731-9379774)
chr6 (1-55)||(11427659-11427714)
chr6 (1-55)||(23128131-23128186)
chr6 (28-62)||(32869712-32869746)
chr6 (29-58)||(28536519-28536548)
chr6 (17-62)||(31953051-31953096)
[»] chr5 (12 HSPs)
chr5 (1-62)||(2252172-2252234)
chr5 (1-62)||(3921269-3921331)
chr5 (1-62)||(2740308-2740370)
chr5 (1-62)||(42414306-42414368)
chr5 (26-62)||(28177809-28177845)
chr5 (1-62)||(14831848-14831910)
chr5 (28-62)||(18520916-18520950)
chr5 (1-62)||(33149642-33149704)
chr5 (26-55)||(6679739-6679768)
chr5 (23-55)||(15409637-15409669)
chr5 (1-52)||(31009032-31009084)
chr5 (30-62)||(36732976-36733008)
[»] chr4 (17 HSPs)
chr4 (1-62)||(17983747-17983809)
chr4 (1-62)||(19670720-19670782)
chr4 (1-58)||(29547963-29548021)
chr4 (1-62)||(29589744-29589806)
chr4 (1-62)||(32766992-32767054)
chr4 (1-58)||(47986246-47986304)
chr4 (16-62)||(50526191-50526237)
chr4 (1-62)||(50813896-50813958)
chr4 (9-62)||(55079727-55079780)
chr4 (17-62)||(55475225-55475270)
chr4 (28-62)||(480479-480513)
chr4 (1-62)||(6034078-6034140)
chr4 (28-62)||(29977919-29977953)
chr4 (28-62)||(48183081-48183115)
chr4 (28-62)||(50052460-50052494)
chr4 (29-62)||(40574813-40574846)
chr4 (20-52)||(18769153-18769185)
[»] chr2 (18 HSPs)
chr2 (1-62)||(2997491-2997553)
chr2 (1-62)||(43490155-43490217)
chr2 (1-60)||(13365389-13365449)
chr2 (23-62)||(40613929-40613968)
chr2 (1-62)||(9058514-9058576)
chr2 (1-62)||(17473054-17473116)
chr2 (1-58)||(38732392-38732450)
chr2 (1-58)||(45097739-45097797)
chr2 (26-62)||(17820034-17820070)
chr2 (1-62)||(5574492-5574554)
chr2 (28-62)||(7465767-7465801)
chr2 (20-62)||(15428764-15428806)
chr2 (28-62)||(28863489-28863523)
chr2 (17-55)||(33436252-33436290)
chr2 (17-62)||(19930841-19930886)
chr2 (17-62)||(26891525-26891570)
chr2 (17-53)||(3737986-3738022)
chr2 (23-55)||(42257234-42257266)
[»] chr1 (14 HSPs)
chr1 (1-62)||(50591004-50591066)
chr1 (1-62)||(5959004-5959066)
chr1 (1-62)||(41608497-41608559)
chr1 (1-62)||(51898687-51898749)
chr1 (13-62)||(26440768-26440817)
chr1 (28-62)||(2581949-2581983)
chr1 (28-62)||(3000353-3000387)
chr1 (28-62)||(9474908-9474942)
chr1 (28-62)||(38595188-38595222)
chr1 (1-62)||(47452324-47452386)
chr1 (5-58)||(47748480-47748534)
chr1 (26-55)||(37649239-37649268)
chr1 (26-62)||(32813281-32813317)
chr1 (1-52)||(37926442-37926494)
[»] chr3 (18 HSPs)
chr3 (1-61)||(36331333-36331394)
chr3 (1-62)||(27714895-27714957)
chr3 (1-62)||(31456723-31456785)
chr3 (1-62)||(49607448-49607510)
chr3 (17-62)||(13898076-13898121)
chr3 (28-62)||(11095385-11095419)
chr3 (28-62)||(33644234-33644268)
chr3 (1-62)||(48587095-48587157)
chr3 (28-62)||(52629334-52629368)
chr3 (28-62)||(53982045-53982079)
chr3 (17-62)||(14623860-14623905)
chr3 (23-52)||(20764942-20764971)
chr3 (13-62)||(33118868-33118917)
chr3 (7-64)||(41080740-41080797)
chr3 (23-52)||(51419387-51419416)
chr3 (31-59)||(1758491-1758519)
chr3 (23-55)||(11347949-11347981)
chr3 (26-62)||(26141562-26141598)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-62)||(152532-152594)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 32914755 - 32914620
Alignment:
Q  90 cgaaccttccaaccccacgacacctataattagccagaagcagtcatgcgaggcaacactaacatcagctgaaacaaagaagacatacaaggtaaacttg 189  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32914755 cgaaccttccaaccccacgacacctaaaattagccagaagcagtcatgcgaggcaacactaacatcagctgaaacaaagaagacatacaaggtaaacttg 32914656  T
Q  190 atattctgaacctttctattatgaaattctcttcca 225  Q
    ||||||||||||||||||||||||||||||||||||    
T  32914655 atattctgaacctttctattatgaaattctcttcca 32914620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16383473 - 16383411
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  16383473 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 16383411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16056405 - 16056463
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||    
T  16056405 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggg 16056463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 1179960 - 1180006
Alignment:
Q  16 atccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||    
T  1179960 atccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 1180006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 24307797 - 24307855
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    |||||||||||| ||| |||| |||||||| | ||||||||||||||||||||||||||    
T  24307797 agtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaaggg 24307855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 34307312 - 34307250
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| | || ||| |||| ||||||||||||||||||||||||||||||||    
T  34307312 agtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgt 34307250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37038575 - 37038513
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  37038575 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 37038513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 5957913 - 5957864
Alignment:
Q  13 gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  5957913 gggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 5957864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32032820 - 32032763
Alignment:
Q  1 agtgtacttgtgg-ggatccacatggccacgtgtcagatttttgtgtgggtgtcaagg 57  Q
    ||||||||||||  ||||||| |||||||| |||||||||||||||||| ||||||||    
T  32032820 agtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaagg 32032763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 10621114 - 10621153
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||| |||||||||||||||||||||||||||| ||||||    
T  10621114 tggctacgtgtcagatttttgtgtgggtgtcaaagggtgt 10621153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 12831115 - 12831081
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  12831115 acgtgtcagatttttgtgtgggtgtcaaagggtgt 12831081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 15197401 - 15197367
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  15197401 acgtgtcagatttttgtgtgggtgtcaaagggtgt 15197367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34012300 - 34012362
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||||| ||||||||||||||||||| ||||||    
T  34012300 agtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgt 34012362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 40423947 - 40424009
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||| |||||||| | ||||||||||||||||||||| |||||| ||||||    
T  40423947 agtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgt 40424009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43414585 - 43414647
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||  || |||||||| ||||||||||||||||||||| ||||||    
T  43414585 agtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgt 43414647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 27744326 - 27744392
Alignment:
Q  13 gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgtttatgtatcataactct 79  Q
    ||||||||| ||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  27744326 gggatccacgtggccacatgtcagatttttgtgtgggtatcaaagggtgtctatgtatcataactct 27744392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22343457 - 22343395
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||| ||| ||||||||||||||||||||||||||||||||    
T  22343457 agtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgt 22343395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41915837 - 41915775
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||| |||||||||||||||    
T  41915837 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgt 41915775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35522972 - 35522920
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgt 52  Q
    ||||| |||||| |||||||| |||||||||||||||||||||||||||||||    
T  35522972 agtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgt 35522920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32564430 - 32564492
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||| ||||| ||| |||| || ||||| ||||||||||||||||||||||||||||||||    
T  32564430 agtgtatttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgt 32564492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38044293 - 38044231
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| ||||| || |||||||||||||||||| |||||||||||||    
T  38044293 agtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgt 38044231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 3694463 - 3694411
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgt 52  Q
    ||||| |||||| |||||||||||| | |||||||||||||||||||||||||    
T  3694463 agtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgt 3694411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3784091 - 3784036
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||| |||||| ||||||||| || | ||||||||||||||||||||||||||||    
T  3784091 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaa 3784036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 16374843 - 16374886
Alignment:
Q  15 gatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    ||||||| || ||||||||||||||||||||||| |||||||||    
T  16374843 gatccacgtgaccacgtgtcagatttttgtgtggatgtcaaggg 16374886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 46374829 - 46374868
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  46374829 tggccacgtgtcagatttttgtgtgggtgttaaagggtgt 46374868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3434658 - 3434596
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | ||||||||| |||||||||||||||||| ||||||    
T  3434658 agtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgt 3434596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8238309 - 8238247
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| ||| | || ||||||||||||||||||||||||| ||||||    
T  8238309 agtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgt 8238247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 19436204 - 19436246
Alignment:
Q  13 gggatccacatggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||||||| || | ||||||||||||||||||||||||||||    
T  19436204 gggatccacgtgactacgtgtcagatttttgtgtgggtgtcaa 19436246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 38267108 - 38267074
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  38267108 acgtgtcagatttttgtgtgggtgtcaaagggtgt 38267074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4231644 - 4231582
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||    
T  4231644 agtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgt 4231582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15508028 - 15508090
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  15508028 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 15508090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15990046 - 15990108
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  15990046 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 15990108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30341364 - 30341426
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  30341364 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 30341426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 12732565 - 12732523
Alignment:
Q  13 gggatccacatggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  12732565 gggatccacatagccacgtgtcagatttttgtgtgggtgtcaa 12732523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 9379731 - 9379774
Alignment:
Q  15 gatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    ||||||||||||||||||||| |||||||| |||||||||||||    
T  9379731 gatccacatggccacgtgtcaaatttttgtatgggtgtcaaggg 9379774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11427714 - 11427659
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||| |||||| ||||||||| || | ||||||||||||||||||||||||||||    
T  11427714 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaa 11427659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23128131 - 23128186
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||| |||||| ||||||||| || | ||||||||||||||||||||||||||||    
T  23128131 agtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaa 23128186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 32869746 - 32869712
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  32869746 acgtgtcagatttttgtgtgggtgtcaaagggtgt 32869712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 28536519 - 28536548
Alignment:
Q  29 cgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    ||||||||||||||||||||||||||||||    
T  28536519 cgtgtcagatttttgtgtgggtgtcaaggg 28536548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 31953051 - 31953096
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||  ||| |||||||||||| |||||||||||||||||||    
T  31953051 tccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgt 31953096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2252172 - 2252234
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  2252172 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 2252234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3921269 - 3921331
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  3921269 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 3921331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 2740370 - 2740308
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  2740370 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 2740308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42414306 - 42414368
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||| |||||||| | |||||||||||||||||||||||||||| ||||||    
T  42414306 agtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 42414368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 28177845 - 28177809
Alignment:
Q  26 ccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||||| ||||||    
T  28177845 ccacgtgtcagatttttgtgtgggtgtcaaagggtgt 28177809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14831910 - 14831848
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | ||||||||||||||| |||||||||||| ||||||    
T  14831910 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgt 14831848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 18520916 - 18520950
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  18520916 acgtgtcagatttttgtgtgggtgtcaaagggtgt 18520950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33149642 - 33149704
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||||| ||||||||||||||||||| ||||||    
T  33149642 agtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgt 33149704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 6679768 - 6679739
Alignment:
Q  26 ccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||||||||||||||||||||||||||||    
T  6679768 ccacgtgtcagatttttgtgtgggtgtcaa 6679739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 15409637 - 15409669
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    |||| ||||||||||||||||||||||||||||    
T  15409637 tggctacgtgtcagatttttgtgtgggtgtcaa 15409669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31009084 - 31009032
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgt 52  Q
    ||||| |||||| ||||||||| || | |||||||||||||||||||||||||    
T  31009084 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgt 31009032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 36732976 - 36733008
Alignment:
Q  30 gtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||| ||||||    
T  36732976 gtgtcagatttttgtgtgggtgtcaaagggtgt 36733008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17983747 - 17983809
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  17983747 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 17983809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19670720 - 19670782
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||| ||||||||||||||    
T  19670720 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgt 19670782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29547963 - 29548021
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    ||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||    
T  29547963 agtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaaggg 29548021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29589744 - 29589806
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| | ||||||||||||||||||||||||||||||    
T  29589744 agtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgt 29589806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32767054 - 32766992
Alignment:
Q  1 agtgtacttgtgg-ggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||||||  || |||| |||||||| |||||||||||||| |||||||||||||||||    
T  32767054 agtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgt 32766992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 47986304 - 47986246
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||| |||||||||    
T  47986304 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaaggg 47986246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 50526191 - 50526237
Alignment:
Q  16 atccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||| || |||||||||||||||||||||||||||||| ||||||    
T  50526191 atccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgt 50526237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50813896 - 50813958
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| | || ||| |||| ||||||||||||||||||||||||||||||||    
T  50813896 agtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgt 50813958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 55079727 - 55079780
Alignment:
Q  9 tgtggggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||| |||| |||||||| |||||||||||||| ||||||||||| |||||    
T  55079727 tgtgggggtccatatggccacatgtcagatttttgtatgggtgtcaagaggtgt 55079780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 55475270 - 55475225
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||    
T  55475270 tccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgt 55475225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 480479 - 480513
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  480479 acgtgtcagatttttgtgtgggtgtcaaagggtgt 480513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 6034140 - 6034078
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | || ||||||||||||||||||||||||| ||||||    
T  6034140 agtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgt 6034078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 29977953 - 29977919
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||||||||||||||||||| |||||||||    
T  29977953 acgtgtcagatttttgtgtgggtgttaaggggtgt 29977919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 48183081 - 48183115
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  48183081 acgtgtcagatttttgtgtgggtgtcaaagggtgt 48183115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 50052460 - 50052494
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  50052460 acgtgtcagatttttgtgtgggtgtcaaagggtgt 50052494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 40574846 - 40574813
Alignment:
Q  29 cgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||||||||||||||||||||| ||||||    
T  40574846 cgtgtcagatttttgtgtgggtgtcaaagggtgt 40574813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Complemental strand, 18769185 - 18769153
Alignment:
Q  20 acatggccacgtgtcagatttttgtgtgggtgt 52  Q
    ||||| |||||||||||||||||||||||||||    
T  18769185 acatgaccacgtgtcagatttttgtgtgggtgt 18769153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2997491 - 2997553
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  2997491 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 2997553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43490217 - 43490155
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  43490217 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 43490155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13365449 - 13365389
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggt 60  Q
    |||||||||||| ||| |||| |||| ||| ||||||||||||||||||||||||||||||    
T  13365449 agtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggt 13365389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 40613929 - 40613968
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  40613929 tggccacgtgtcagatttttgtgtgggtgtcaaagggtgt 40613968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9058576 - 9058514
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||| |||||||| | |||||||||||||||||||||||||||| ||||||    
T  9058576 agtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 9058514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17473116 - 17473054
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  17473116 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 17473054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38732450 - 38732392
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    |||||||||||| ||| |||| ||| |||| ||||||||||||||||||||||||||||    
T  38732450 agtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaaggg 38732392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45097739 - 45097797
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||| |||||||||||||    
T  45097739 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaaggg 45097797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 17820034 - 17820070
Alignment:
Q  26 ccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||| ||||||||||||||||||||||||||||||||    
T  17820034 ccacatgtcagatttttgtgtgggtgtcaaggggtgt 17820070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5574492 - 5574554
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | ||||||||||||||| |||||||||||| ||||||    
T  5574492 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgt 5574554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 7465767 - 7465801
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  7465767 acgtgtcagatttttgtgtgggtgtcaaagggtgt 7465801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 15428764 - 15428806
Alignment:
Q  20 acatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||| ||||||||||||||||| |||| |||||||||    
T  15428764 acatggccacatgtcagatttttgtgtgagtgttaaggggtgt 15428806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 28863523 - 28863489
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  28863523 acgtgtcagatttttgtgtgggtgtcaaagggtgt 28863489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 33436290 - 33436252
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  33436290 tccacatggtcacgtgtcagatttttatgtgggtgtcaa 33436252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 19930841 - 19930886
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||| | ||||||||||||||||||||| |||||| ||||||    
T  19930841 tccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgt 19930886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 26891525 - 26891570
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| || |||| ||||||||||||||||||||||| ||||||||    
T  26891525 tccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgt 26891570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 3738022 - 3737986
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtc 53  Q
    |||||||| |||| |||||||||||||||||||||||    
T  3738022 tccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 42257266 - 42257234
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    |||||||||||||||||||| ||||||||||||    
T  42257266 tggccacgtgtcagatttttatgtgggtgtcaa 42257234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50591004 - 50591066
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  50591004 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgt 50591066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5959004 - 5959066
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||| |||| ||| |||| |||||||||||||||||||||||||| |||||    
T  5959004 agtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgt 5959066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41608497 - 41608559
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||  ||| |||| |||||||| ||||||||||||||||| ||||||||||||||    
T  41608497 agtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgt 41608559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51898687 - 51898749
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  51898687 agtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 51898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 26440817 - 26440768
Alignment:
Q  13 gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||  |||||||||||||||||||||||||||||| || ||||||    
T  26440817 gggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgt 26440768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 2581983 - 2581949
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  2581983 acgtgtcagatttttgtgtgggtgtcaaagggtgt 2581949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 3000387 - 3000353
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  3000387 acgtgtcagatttttgtgtgggtgtcaaagggtgt 3000353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 9474908 - 9474942
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  9474908 acgtgtcagatttttgtgtgggtgtcaaagggtgt 9474942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 38595222 - 38595188
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  38595222 acgtgtcagatttttgtgtgggtgtcaaagggtgt 38595188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47452324 - 47452386
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||| ||||||||||||||||||||| ||||||    
T  47452324 agtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgt 47452386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 47748534 - 47748480
Alignment:
Q  5 tacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggg 58  Q
    |||||||| |||||||| |||||||| |||||||||||| | |||||||||||||    
T  47748534 tacttgtgcgggatccatatggccacatgtcagatttttatatgggtgtcaaggg 47748480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 37649268 - 37649239
Alignment:
Q  26 ccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    ||||||||||||||||||||||||||||||    
T  37649268 ccacgtgtcagatttttgtgtgggtgtcaa 37649239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 32813317 - 32813281
Alignment:
Q  26 ccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||||||||||||||||||||| || ||||||    
T  32813317 ccacgtgtcagatttttgtgtgggtgttaaagggtgt 32813281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37926442 - 37926494
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgt 52  Q
    |||||||||||  ||||||||  |||||||||||||||||||| |||||||||    
T  37926442 agtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgt 37926494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36331333 - 36331394
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtg 61  Q
    |||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  36331333 agtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtg 36331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 27714895 - 27714957
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||| |||||||| | |||||||||||||||||||||||||||| ||||||    
T  27714895 agtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 27714957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31456785 - 31456723
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||| |||||||| | |||||||||||||||||||||||||||| ||||||    
T  31456785 agtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 31456723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 49607510 - 49607448
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||| |||||| ||||||||| || | |||||||||||||||||||||||||||| ||||||    
T  49607510 agtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgt 49607448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 13898076 - 13898121
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||  |||||||||||||||| |||||||||||||||||||    
T  13898076 tccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgt 13898121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 11095385 - 11095419
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  11095385 acgtgtcagatttttgtgtgggtgtcaaagggtgt 11095419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 33644268 - 33644234
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  33644268 acgtgtcagatttttgtgtgggtgtcaaagggtgt 33644234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 48587095 - 48587157
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||| ||||||||| || | ||||||||||||||| ||| |||||||| ||||||    
T  48587095 agtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgt 48587157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 52629368 - 52629334
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  52629368 acgtgtcagatttttgtgtgggtgtcaaagggtgt 52629334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 53982079 - 53982045
Alignment:
Q  28 acgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  53982079 acgtgtcagatttttgtgtgggtgtcaaagggtgt 53982045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 14623860 - 14623905
Alignment:
Q  17 tccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||  ||| |||||||||||| |||||||||||||||||||    
T  14623860 tccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgt 14623905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 20764942 - 20764971
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgt 52  Q
    ||||||||||||||||||||||||||||||    
T  20764942 tggccacgtgtcagatttttgtgtgggtgt 20764971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 33118868 - 33118917
Alignment:
Q  13 gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||| || | |||||||| ||||||||||||||||||| ||||||    
T  33118868 gggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgt 33118917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 41080797 - 41080740
Alignment:
Q  7 cttgtggggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgttt 64  Q
    |||||| || |||||||| |||| | ||||||||||| ||||||||||| ||||||||    
T  41080797 cttgtgtgggtccacatgaccacatatcagatttttgcgtgggtgtcaaagggtgttt 41080740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 51419387 - 51419416
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgt 52  Q
    ||||||||||||||||||||||||||||||    
T  51419387 tggccacgtgtcagatttttgtgtgggtgt 51419416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 1758491 - 1758519
Alignment:
Q  31 tgtcagatttttgtgtgggtgtcaagggg 59  Q
    |||||||||||||||||||||||||||||    
T  1758491 tgtcagatttttgtgtgggtgtcaagggg 1758519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 11347949 - 11347981
Alignment:
Q  23 tggccacgtgtcagatttttgtgtgggtgtcaa 55  Q
    |||||||||||||||||||||||||| ||||||    
T  11347949 tggccacgtgtcagatttttgtgtggatgtcaa 11347981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 26141562 - 26141598
Alignment:
Q  26 ccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    ||||||||||||||||||||||||||| || ||||||    
T  26141562 ccacgtgtcagatttttgtgtgggtgttaaagggtgt 26141598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 152594 - 152532
Alignment:
Q  1 agtgtacttgtg-gggatccacatggccacgtgtcagatttttgtgtgggtgtcaaggggtgt 62  Q
    |||||| ||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  152594 agtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgt 152532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University