View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16232_low_36 (Length: 210)

Name: NF16232_low_36
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16232_low_36
NF16232_low_36
[»] chr8 (18 HSPs)
chr8 (81-203)||(28901394-28901516)
chr8 (85-191)||(24120174-24120280)
chr8 (104-203)||(12956451-12956550)
chr8 (84-191)||(14977173-14977280)
chr8 (73-184)||(11310277-11310388)
chr8 (74-176)||(16052358-16052460)
chr8 (82-203)||(22894584-22894709)
chr8 (89-191)||(6358645-6358747)
chr8 (82-203)||(16054234-16054355)
chr8 (81-170)||(28252468-28252557)
chr8 (105-182)||(13082012-13082090)
chr8 (96-191)||(32239241-32239336)
chr8 (119-203)||(29047373-29047454)
chr8 (103-203)||(26882368-26882469)
chr8 (119-203)||(5570195-5570279)
chr8 (109-191)||(28902056-28902138)
chr8 (74-180)||(29291703-29291809)
chr8 (96-142)||(30543717-30543763)
[»] chr5 (19 HSPs)
chr5 (82-203)||(24841693-24841814)
chr5 (82-201)||(17382091-17382210)
chr5 (82-200)||(25594749-25594867)
chr5 (81-184)||(17027466-17027569)
chr5 (82-184)||(12340087-12340187)
chr5 (105-191)||(24517317-24517403)
chr5 (98-182)||(30072134-30072218)
chr5 (65-155)||(22229732-22229822)
chr5 (81-177)||(11274411-11274506)
chr5 (96-191)||(18222447-18222542)
chr5 (74-189)||(22967910-22968025)
chr5 (85-183)||(16622741-16622838)
chr5 (104-203)||(16634007-16634107)
chr5 (132-203)||(25680586-25680657)
chr5 (73-203)||(15205576-15205704)
chr5 (105-151)||(22754911-22754957)
chr5 (98-166)||(25075328-25075396)
chr5 (98-166)||(25133297-25133365)
chr5 (116-200)||(26330125-26330209)
[»] scaffold0171 (2 HSPs)
scaffold0171 (83-201)||(6137-6255)
scaffold0171 (81-203)||(21336-21458)
[»] chr7 (19 HSPs)
chr7 (81-203)||(29544458-29544580)
chr7 (82-184)||(7142038-7142140)
chr7 (83-203)||(22067860-22067980)
chr7 (81-203)||(23124840-23124961)
chr7 (98-184)||(20446194-20446281)
chr7 (82-184)||(7494651-7494753)
chr7 (73-203)||(9066063-9066193)
chr7 (105-202)||(7815285-7815383)
chr7 (74-184)||(20470883-20470993)
chr7 (129-203)||(315172-315246)
chr7 (117-191)||(9385463-9385537)
chr7 (82-203)||(21471737-21471858)
chr7 (130-203)||(1255267-1255340)
chr7 (86-203)||(21545853-21545969)
chr7 (96-182)||(46054652-46054738)
chr7 (79-140)||(2353357-2353418)
chr7 (73-141)||(4092603-4092671)
chr7 (78-146)||(19140085-19140153)
chr7 (78-146)||(20739484-20739552)
[»] chr3 (17 HSPs)
chr3 (82-191)||(33914628-33914737)
chr3 (74-184)||(13911197-13911307)
chr3 (81-184)||(25919537-25919640)
chr3 (83-203)||(1475334-1475454)
chr3 (71-184)||(19219284-19219397)
chr3 (97-184)||(21017832-21017919)
chr3 (83-180)||(12573231-12573328)
chr3 (83-180)||(13549695-13549792)
chr3 (104-200)||(12409420-12409516)
chr3 (79-182)||(16970178-16970280)
chr3 (110-191)||(11521107-11521189)
chr3 (73-147)||(17637034-17637108)
chr3 (119-203)||(25883080-25883164)
chr3 (82-182)||(8402625-8402725)
chr3 (109-200)||(10341763-10341853)
chr3 (109-177)||(10303427-10303495)
chr3 (159-203)||(18065833-18065877)
[»] chr2 (13 HSPs)
chr2 (74-203)||(21505193-21505322)
chr2 (71-184)||(25473966-25474079)
chr2 (82-200)||(28278480-28278597)
chr2 (86-182)||(32619586-32619682)
chr2 (121-200)||(30998750-30998829)
chr2 (82-200)||(35707743-35707861)
chr2 (119-182)||(16593827-16593890)
chr2 (98-200)||(19949611-19949714)
chr2 (95-145)||(31914045-31914095)
chr2 (83-191)||(1733042-1733149)
chr2 (141-203)||(35031701-35031763)
chr2 (73-182)||(18236377-18236486)
chr2 (120-183)||(21844703-21844766)
[»] chr4 (17 HSPs)
chr4 (80-203)||(18897929-18898052)
chr4 (82-191)||(12111398-12111505)
chr4 (74-189)||(1676363-1676478)
chr4 (74-189)||(1682891-1683006)
chr4 (98-203)||(5906774-5906879)
chr4 (73-200)||(25315288-25315415)
chr4 (82-153)||(15192143-15192214)
chr4 (96-181)||(34864367-34864452)
chr4 (83-174)||(1696652-1696741)
chr4 (109-203)||(27302745-27302839)
chr4 (82-201)||(9783039-9783158)
chr4 (110-201)||(4953650-4953741)
chr4 (82-203)||(10320273-10320394)
chr4 (85-182)||(22119589-22119686)
chr4 (97-146)||(33518995-33519044)
chr4 (91-149)||(25050173-25050231)
chr4 (119-151)||(5125581-5125613)
[»] chr1 (17 HSPs)
chr1 (86-203)||(26657420-26657537)
chr1 (83-204)||(21451869-21451989)
chr1 (82-203)||(30675423-30675545)
chr1 (96-191)||(12810276-12810371)
chr1 (96-203)||(50047135-50047242)
chr1 (82-202)||(11770049-11770169)
chr1 (82-184)||(8247730-8247832)
chr1 (74-191)||(23223343-23223460)
chr1 (98-184)||(12423987-12424074)
chr1 (109-191)||(23519821-23519903)
chr1 (88-203)||(25266399-25266514)
chr1 (97-189)||(18301071-18301165)
chr1 (97-179)||(25730649-25730730)
chr1 (79-152)||(25777936-25778009)
chr1 (119-191)||(24903361-24903433)
chr1 (98-165)||(30781715-30781783)
chr1 (105-184)||(34381671-34381750)
[»] chr6 (11 HSPs)
chr6 (79-191)||(30355263-30355375)
chr6 (107-203)||(13759505-13759602)
chr6 (81-151)||(15576268-15576338)
chr6 (119-183)||(15574902-15574965)
chr6 (103-182)||(14924492-14924571)
chr6 (82-203)||(16527836-16527951)
chr6 (105-180)||(16387325-16387400)
chr6 (85-194)||(15998454-15998563)
chr6 (73-122)||(12974269-12974318)
chr6 (103-183)||(20495867-20495947)
chr6 (119-183)||(32930546-32930610)
[»] scaffold0282 (1 HSPs)
scaffold0282 (85-203)||(22599-22717)
[»] scaffold0188 (1 HSPs)
scaffold0188 (103-179)||(27032-27108)
[»] scaffold0002 (1 HSPs)
scaffold0002 (73-152)||(446936-447015)
[»] scaffold0386 (2 HSPs)
scaffold0386 (96-194)||(13134-13232)
scaffold0386 (85-204)||(8762-8881)


Alignment Details
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 28901516 - 28901394
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||||  |||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||||    
T  28901516 ggagcatcatatgaaatttttggctatgcttttaatacttttctttgcatttgaatacaaataagttgagagatagaggagttgtcaatggtttgaggaa 28901417  T
Q  181 cataatgtattcttctcactcga 203  Q
    |||| |||||| || ||||||||    
T  28901416 catattgtattgttttcactcga 28901394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 85 - 191
Target Start/End: Original strand, 24120174 - 24120280
Alignment:
Q  85 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 184  Q
    |||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || | |||||||||| ||||||||||| |||    
T  24120174 catcatatgatattttttgctatgtttttagtacttttctttgcatttgaagagaaataagatgagagttagaggagttgtcaacggtttgaggaatata 24120273  T
Q  185 atgtatt 191  Q
     ||||||    
T  24120274 ttgtatt 24120280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 12956451 - 12956550
Alignment:
Q  104 ctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||| ||| |||||| || ||||||||    
T  12956451 ctatgtttttagtacttttctttgcatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaaaatattgtattgttttcactcga 12956550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 14977280 - 14977173
Alignment:
Q  84 gcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 183  Q
    ||||||||||  ||||||  |||||||||||  |||||||||||||||| ||||||||||||||||||| || | |||||||||||||||||||||||||    
T  14977280 gcatcatatgatatttttaactatgtttttagcacttttctttgcattttaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacat 14977181  T
Q  184 aatgtatt 191  Q
    | ||||||    
T  14977180 attgtatt 14977173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 11310388 - 11310277
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggt 172  Q
    ||||| || ||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||| || | |||||||||||    
T  11310388 ttgataacagagcatcatatgatattttttgctatgtttttagtacttatctttgcatttgaagaaaaataagttgagagatagaaaaattgtcaatggt 11310289  T
Q  173 ttgaggaacata 184  Q
    || || ||||||    
T  11310288 ttaagaaacata 11310277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 74 - 176
Target Start/End: Complemental strand, 16052460 - 16052358
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| |||||||||||||||  |||||| |||||||||||| ||||||| ||||||||||| ||||||||| ||||||| || | |||||||||||||||    
T  16052460 tgatgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggtt 16052361  T
Q  174 tga 176  Q
    |||    
T  16052360 tga 16052358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 22894709 - 22894584
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatata----agagttgtcaatggtttgag 177  Q
    |||||||||||| ||||||| | |||||||||| |||||||||| |||||||||| |||||||| ||||||||| |      ||||||||||||||||||    
T  22894709 gagcatcatatgacatttttaggtatgtttttagtacttttcttcgcatttgaagccaaataagttgagagatagagaactaagttgtcaatggtttgag 22894610  T
Q  178 gaacataatgtattcttctcactcga 203  Q
    | ||||| |||||||||  |||||||    
T  22894609 gtacatattgtattctttacactcga 22894584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 6358645 - 6358747
Alignment:
Q  89 atatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgt 188  Q
    ||||| ||||||  |||||||||||| ||||||| |||||||||||||||| ||||| ||||||||| | ||||||| ||||||||| | |||||| |||    
T  6358645 atatgacattttgggctatgtttttagtacttttatttgcatttgaagacatataagttgagagatagaggagttgttaatggtttgggaaacatattgt 6358744  T
Q  189 att 191  Q
    |||    
T  6358745 att 6358747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 16054234 - 16054355
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||| ||||||  ||||||| |||| ||||||| ||||||||||||||||||||||||| |||| || | |||||||||||| ||| |||||    
T  16054234 gagcatcatatgacattttg-gctatgtctttagtactttttctttgcatttgaagacaaataagataagagttagaggagttgtcaatgatttaaggaa 16054332  T
Q  181 cataatgtattcttctcactcga 203  Q
    |||  |||||| || ||||||||    
T  16054333 cattttgtattgttttcactcga 16054355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 28252557 - 28252468
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatg 170  Q
    |||||||||||||  |||||||| |||||||||||||||||| || | |||| ||||||||||||||||||| || ||||| ||||||||    
T  28252557 ggagcatcatatgatattttttgttatgtttttaatacttttattcgtatttaaagacaaataagatgagagttagaagagatgtcaatg 28252468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 13082090 - 13082012
Alignment:
Q  105 tatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| || | |||||||||||| |||||| ||||    
T  13082090 tatgtttttagtactttttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatgatttgagaaaca 13082012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 32239241 - 32239336
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    |||||| ||||||||||||  |||||||||| |||||||||| | ||||||| | |  || | ||||||||||||||||||| |||||| ||||||    
T  32239241 atttttggctatgtttttagcacttttctttacatttgaagatagataagataataattagaggagttgtcaatggtttgagtaacatattgtatt 32239336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 29047454 - 29047373
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||||||||||||||| |||||||||||||||| || | ||||||||||||||   ||||||| | |||||| || ||||||||    
T  29047454 ttttctttgcatttgaaaacaaataagatgagagttagaggagttgtcaatggt---aggaacacattgtattgttttcactcga 29047373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 26882368 - 26882469
Alignment:
Q  103 gctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactc 201  Q
    |||||||||||| ||||||| ||| ||| | |||||||||||| ||||||  || | |||||| ||||||||| |||| ||||||||||| || ||||||    
T  26882368 gctatgtttttagtactttttcttcgcaatcgaagacaaataaaatgagatttaaaggagttgccaatggtttaaggagcataatgtattgttttcactc 26882467  T
Q  202 ga 203  Q
    ||    
T  26882468 ga 26882469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 5570279 - 5570195
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    |||| |||||||||||||| |||||||||||||  |  | |||||||||||  ||||||||||||| |||||| || ||||||||    
T  5570279 ttttttttgcatttgaagaaaaataagatgagatttgaaggagttgtcaatactttgaggaacatattgtattgttttcactcga 5570195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 28902056 - 28902138
Alignment:
Q  109 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    |||||| ||||||| |||||||||  || ||| |||||||| ||||| | ||||| | ||||||||||| |||||| ||||||    
T  28902056 tttttagtacttttatttgcatttataggcaagtaagatgatagatagaggagttattaatggtttgagaaacatattgtatt 28902138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 29291703 - 29291809
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||||||||| |||||||||  |||||  |||||||||||  |  |||||||| ||||||||| ||||| ||| |  | ||| | ||||| |||||||||    
T  29291703 tgattacggaacatcatatgatattttaggctatgttttttgttattttcttttcatttgaaggcaaattagaagtcatatagaggagttatcaatggtt 29291802  T
Q  174 tgaggaa 180  Q
    |||||||    
T  29291803 tgaggaa 29291809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 30543717 - 30543763
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaat 142  Q
    |||||| |||||||||||| || |||| |||||||||||||||||||    
T  30543717 atttttagctatgtttttagtatttttttttgcatttgaagacaaat 30543763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 24841693 - 24841814
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||||||| | ||||| |||||||||||||||||    
T  24841693 gagcatcatatgacattttttgctatgtttttagtactattctttgcatttgaagacaaataagtttagagatagaggagttttcaatggtttgaggaac 24841792  T
Q  182 ataatgtattcttctcactcga 203  Q
    ||| |||||| || ||||||||    
T  24841793 atattgtattgttttcactcga 24841814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 17382210 - 17382091
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    ||||||||||||  |||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  17382210 gagcatcatatgatattttttgctatgtgtttagtacttttttttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaac 17382111  T
Q  182 ataatgtattcttctcactc 201  Q
    ||| |||||| || ||||||    
T  17382110 atattgtattgttttcactc 17382091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 25594867 - 25594749
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||||||   |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| || | || || |||||||||||||||||    
T  25594867 gagcatcatatattatttttggctatgtttttagtacttttatttgcatttgaagacaaataagatgagagttagaggatttctcaatggtttgaggaac 25594768  T
Q  182 ataatgtattcttctcact 200  Q
    ||| |||||| || |||||    
T  25594767 atattgtattgttttcact 25594749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 17027466 - 17027569
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    ||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||| || | | || ||||| |||||||||||    
T  17027466 ggagcatcatatgacatttttggctatgtttttagtacttttctttgcatttaaagacaattaagatgagagttagaggcgtggtcaagggtttgaggaa 17027565  T
Q  181 cata 184  Q
    ||||    
T  17027566 cata 17027569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 12340187 - 12340087
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||||||| ||||||  |||||||||||| || ||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||    
T  12340187 gagcatcatatgacattttg-gctatgtttttagta-ttttctttgcatttgaagacaaataaggtgagagttagaggagttgtcaatggtttgaggaac 12340090  T
Q  182 ata 184  Q
    |||    
T  12340089 ata 12340087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 24517317 - 24517403
Alignment:
Q  105 tatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||  || | |||||||||||||||||||||||||| ||||||    
T  24517317 tatgtttttagttctttgctttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtatt 24517403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 30072134 - 30072218
Alignment:
Q  98 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    |||| |||||||||| | |||||||||||| |||||||||||||||||||||||  || | ||||||||||||||||||||||||    
T  30072134 ttttggctatgttttaagtacttttctttggatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaaca 30072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 22229732 - 22229822
Alignment:
Q  65 cttgaatgttgattacggagcatcatatgccattttttgctatgtttttaa-tacttttctttgcatttgaagacaaataagatgagagata 155  Q
    |||| |||||||| || |||||||||||| ||||||  ||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  22229732 cttggatgttgatgacagagcatcatatgtcattttg-gctatgttttttagtacttttctttgcatttgaagacaaataagatgagagata 22229822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 11274506 - 11274411
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgag 177  Q
    |||||||||| ||  |||||||||||| |||||| ||||||||||||||||| ||||| |||||||| ||||||| |  ||||||||||||||||||    
T  11274506 ggagcatcatttgatattttttgctat-tttttagtacttttctttgcatttaaagaccaataagataagagatagatcagttgtcaatggtttgag 11274411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 18222447 - 18222542
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    |||||| ||||| |||||| || |||| |||  |||||||||||||||||||||||| || | ||||||||||||||||||| |||||| ||||||    
T  18222447 atttttagctatatttttagtatttttatttctatttgaagacaaataagatgagagttagatgagttgtcaatggtttgagaaacatattgtatt 18222542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 22968025 - 22967910
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| |||||| ||||||||  |||||  |||||||||||| || |||||||||||| | |||||||||||||||     || | ||||||| |||||||    
T  22968025 tgatgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtt 22967926  T
Q  174 tgaggaacataatgta 189  Q
    ||||||||||| ||||    
T  22967925 tgaggaacatattgta 22967910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 16622838 - 16622741
Alignment:
Q  85 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 183  Q
    |||||||||  | |||| |||||||||||| || |||| ||| |||||||||||||||| ||  |||| || | |||||||||||||||||||||||||    
T  16622838 catcatatgataattttagctatgtttttagtattttt-tttacatttgaagacaaatacgaaaagagttaaaggagttgtcaatggtttgaggaacat 16622741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 16634007 - 16634107
Alignment:
Q  104 ctatgtttttaatacttttctttg-catttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcg 202  Q
    ||||||||||| ||||||| |||  | ||| |||| |||||||||||||| |  | ||||||||||||||||||| |||||| |||||| || |||||||    
T  16634007 ctatgtttttagtactttttttttacgtttaaagaaaaataagatgagagttggatgagttgtcaatggtttgagaaacatattgtattgttttcactcg 16634106  T
Q  203 a 203  Q
    |    
T  16634107 a 16634107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 25680586 - 25680657
Alignment:
Q  132 tgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    |||||||||| |||||||||| |||  || || |||||||||||||||||||| |||||| || ||||||||    
T  25680586 tgaagacaaaaaagatgagagttattggatttttcaatggtttgaggaacatattgtattgttttcactcga 25680657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 15205576 - 15205704
Alignment:
Q  73 ttgattacggagcatcatatgccattttttg-ctatgtttttaatacttttc-tttgcatttgaagacaaataagatgagagatataagagttgtcaatg 170  Q
    ||||| || ||||||||||||  || ||||| ||||||||||| || ||||  ||||||||| || ||||||||||||||   || | ||||||||| ||    
T  15205576 ttgatgacagagcatcatatg--atattttgactatgtttttagtattttttatttgcatttaaatacaaataagatgagt--taaaggagttgtcagtg 15205671  T
Q  171 gtttgaggaacataatgtattcttctcactcga 203  Q
    |||||||||||||| |||||| || ||||||||    
T  15205672 gtttgaggaacatattgtattgttttcactcga 15205704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 22754911 - 22754957
Alignment:
Q  105 tatgtttttaatacttttctttgcatttgaagacaaataagatgaga 151  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  22754911 tatgtttttagtacgtttctttgcatttaaagacaaataagatgaga 22754957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 25075396 - 25075328
Alignment:
Q  98 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtc 166  Q
    |||| |||||||||||| || ||||||||||| |||||||||||||| || |||| || | ||||||||    
T  25075396 ttttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25075328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 25133365 - 25133297
Alignment:
Q  98 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtc 166  Q
    |||| |||||||||||| || ||||||||||| |||||||||||||| || |||| || | ||||||||    
T  25133365 ttttggctatgtttttagtaattttctttgcacttgaagacaaataatattagagttagaggagttgtc 25133297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 26330209 - 26330125
Alignment:
Q  116 tacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 200  Q
    ||||||||||||||||  |||||||||||| ||||||||  |  ||||||||||||| | ||||| ||| |||||| || |||||    
T  26330209 tacttttctttgcattgtaagacaaataagttgagagatggagtagttgtcaatggtctaaggaatatattgtattgttttcact 26330125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 6137 - 6255
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||| ||||| || |||||||||||||||| |||| ||||| ||||||||||||||||||    
T  6137 agcatcatatggcatttttggctatgtttttagtacttttctttccatttaaacacaaataagatgagagttatatgagttttcaatggtttgaggaaca 6236  T
Q  183 taatgtattcttctcactc 201  Q
    ||||||||| || ||||||    
T  6237 taatgtattattttcactc 6255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 21336 - 21458
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||||  |||||||  |||||||||| |  ||||||||||||||||||| |||||||||   || |||| ||| | | || |||||||||||    
T  21336 ggagcatcatatgatattttttattatgtttttagtgtttttctttgcatttgaagaaaaataagatttaagttatatgagatctaaagggtttgaggaa 21435  T
Q  181 cataatgtattcttctcactcga 203  Q
    | || |||||| || ||||||||    
T  21436 cttattgtattgttttcactcga 21458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 29544458 - 29544580
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||||  |||||| |||||||||||| || |||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||    
T  29544458 ggagcatcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaa 29544557  T
Q  181 cataatgtattcttctcactcga 203  Q
    |||| |||||| || ||||||||    
T  29544558 catattgtattgttttcactcga 29544580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 7142038 - 7142140
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||||||| ||||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||| ||| |||||||||||||||| ||||||    
T  7142038 gagcatcatatgacatttttggctatgtttttaatagttttctttgcatttaaagacaaataagttgagagagatatgagttgtcaatggtttaaggaac 7142137  T
Q  182 ata 184  Q
    |||    
T  7142138 ata 7142140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 22067980 - 22067860
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatacttttc-tttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    ||||||||||| ||||||  |||||||||||| || ||||  ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||    
T  22067980 agcatcatatgacattttg-gctatgtttttagtaatttttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaac 22067882  T
Q  182 ataatgtattcttctcactcga 203  Q
    |||||||||| || ||||||||    
T  22067881 ataatgtattgttttcactcga 22067860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 23124840 - 23124961
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||| || |||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||  || | ||||||| | |||| |||||||    
T  23124840 ggagcatcatctgacattttttactatgtttttagtacttt-ctttacatttgaagacaaataagatgagatttagaggagttgttagtggtctgaggaa 23124938  T
Q  181 cataatgtattcttctcactcga 203  Q
    |||| |||||| || ||||||||    
T  23124939 catattgtattgttttcactcga 23124961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 20446194 - 20446281
Alignment:
Q  98 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 184  Q
    |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||  || | |||||||||||||||| || ||||||    
T  20446194 ttttagctatgtttttaatactttttctttgcatttgaagacaattaagatgagaattagaggagttgtcaatggtttcagaaacata 20446281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 7494651 - 7494753
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||| |||  |||||| |||||  ||||| |||||||||||||| ||||||||||| | | ||||||||| || |||||| |||||||||||||||    
T  7494651 gagcatcacatgatatttttggctattcttttagtacttttctttgcacttgaagacaaacaggttgagagataaaatagttgttaatggtttgaggaac 7494750  T
Q  182 ata 184  Q
    |||    
T  7494751 ata 7494753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 9066063 - 9066193
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggt 172  Q
    ||||| ||| ||||| ||||| |||||||| |||| ||| || ||||||| || | ||||||||||||||||| ||| ||||| |  ||||||||||| |    
T  9066063 ttgatgacgaagcattatatgacattttttactatatttatagtacttttgttagaatttgaagacaaataagttgatagatagagaagttgtcaatgtt 9066162  T
Q  173 ttgaggaacataatgtattcttctcactcga 203  Q
    || ||||||||| |||||| || ||||||||    
T  9066163 tttaggaacatattgtattgttttcactcga 9066193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 7815285 - 7815383
Alignment:
Q  105 tatgtttttaatacttttct-ttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcg 202  Q
    |||||||||| ||||||| | ||||||||||||| |||||||||||||| || | || ||||||||||||| || |||||| |||||| || |||||||    
T  7815285 tatgtttttagtacttttttgttgcatttgaagataaataagatgagagttaaaggacttgtcaatggtttaagaaacatattgtatttttttcactcg 7815383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 20470993 - 20470883
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| ||| |||||||||||   ||||| ||| |||||||| ||||||| |||  || |||||||||||||||||| |  || | |||||||||||||||    
T  20470993 tgatgacgaagcatcatatgaattttttggctttgtttttagtacttttatttatatgtgaagacaaataagatgataattagaggagttgtcaatggtt 20470894  T
Q  174 tgaggaacata 184  Q
    |||||||||||    
T  20470893 tgaggaacata 20470883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 315172 - 315246
Alignment:
Q  129 atttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||||||| |||||||||||||| || | |||||||||||||||||| ||| ||| |||||| || ||||||||    
T  315172 atttgaagaaaaataagatgagagttagaggagttgtcaatggtttgaagaatatattgtattattgtcactcga 315246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 9385463 - 9385537
Alignment:
Q  117 acttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    ||||||| |||||||||||||||| ||||||||||||||   ||||||| |||||||||| |||| || ||||||    
T  9385463 acttttccttgcatttgaagacaattaagatgagagatagtggagttgttaatggtttgatgaacttattgtatt 9385537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 21471737 - 21471858
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||||||||||  | |||||||||| ||||||| | ||||||||||||||||||||||||| |  || | || ||||||||| ||| | |||    
T  21471737 gagcatcatatgccattttg-gttatgtttttagtactttttccttgcatttgaagacaaataagatgatatttagaggatttgtcaatgattttaagaa 21471835  T
Q  181 cataatgtattcttctcactcga 203  Q
    |||| | |||| || ||||||||    
T  21471836 catattatattgttttcactcga 21471858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 1255340 - 1255267
Alignment:
Q  130 tttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    |||||||||||||||| |||||| || | |||||||||||||||||||||| | | |||||| || ||||||||    
T  1255340 tttgaagacaaataagttgagagttagaggagttgtcaatggtttgaggaataaattgtattgttttcactcga 1255267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 21545969 - 21545853
Alignment:
Q  86 atcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataa 185  Q
    ||||||||  ||||||  ||||||||||| ||||||||||| |  ||||||||||  ||||||| |  || |  |||||||||||||||||||||||||     
T  21545969 atcatatgatatttttgactatgtttttagtacttttcttttccattgaagacaac-aagatgataattaaataagttgtcaatggtttgaggaacatat 21545871  T
Q  186 tgtattcttctcactcga 203  Q
    |||||| || ||||||||    
T  21545870 tgtattgttttcactcga 21545853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 46054652 - 46054738
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    ||||| |||||||||||||||  |||| |||| |||||||| |||||||||||  |  || | ||||||||| || |||||||||||    
T  46054652 attttatgctatgtttttaattattttttttgtatttgaaggcaaataagatgtcatttaaaggagttgtcattgatttgaggaaca 46054738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 2353418 - 2353357
Alignment:
Q  79 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaa 140  Q
    |||||||||| ||||  |||||  |||||||||||| |  ||||||||||||||||||||||    
T  2353418 acggagcatcgtatgatattttaggctatgtttttagttgttttctttgcatttgaagacaa 2353357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 4092603 - 4092671
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaa 141  Q
    ||||| || ||| |||||||| ||||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  4092603 ttgatgacagagaatcatatgacattttt-gctatatttttagtactttttctttgcatttgaagacaaa 4092671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 19140153 - 19140085
Alignment:
Q  78 tacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataaga 146  Q
    |||||| ||||||||   |||||| |||||||||| | |  ||||||||||||||||||||||| ||||    
T  19140153 tacggaacatcatataatatttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 19140085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 20739552 - 20739484
Alignment:
Q  78 tacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataaga 146  Q
    |||||| ||||||||   |||||| |||||||||| | |  ||||||||||||||||||||||| ||||    
T  20739552 tacggaacatcatataatatttttggctatgttttaagttattttctttgcatttgaagacaaaaaaga 20739484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 33914737 - 33914628
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||| |||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  33914737 gagcatcacatgccactttttactatgtttttagtacttttctttgcatttcaagacaaataagatgagagttataggagttgtcaacggtttgaggaac 33914638  T
Q  182 ataatgtatt 191  Q
    ||| ||||||    
T  33914637 atattgtatt 33914628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 13911197 - 13911307
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| |||||| |||| |||  ||||||| ||||||||||| || ||||||||| |||||||||||| ||||  |||||||| |||||||||||||||||    
T  13911197 tgatgacggagaatcaaatgatatttttttctatgtttttagtaattttctttgtatttgaagacaagtaagtagagagatagaagagttgtcaatggtt 13911296  T
Q  174 tgaggaacata 184  Q
    |||||||||||    
T  13911297 tgaggaacata 13911307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 25919640 - 25919537
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||||  |||| | | |||||||||| ||| |||||||| |||||||||||||||||||||||| || | || |||||||||||||||||||    
T  25919640 ggagcatcatatgatatttctggttatgtttttagtacatttctttgaatttgaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 25919541  T
Q  181 cata 184  Q
    ||||    
T  25919540 cata 25919537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 1475454 - 1475334
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    ||||||||||| ||||||  |||||||||||| ||||||| |||||||||||||| | ||||||||||||| || | ||||| ||||||||||||||||     
T  1475454 agcatcatatgacattttg-gctatgtttttagtactttttctttgcatttgaagtctaataagatgagagttagaggagttttcaatggtttgaggaat 1475356  T
Q  182 ataatgtattcttctcactcga 203  Q
    ||| |||||| || ||||||||    
T  1475355 atattgtattattttcactcga 1475334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 19219397 - 19219284
Alignment:
Q  71 tgttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatg 170  Q
    ||||||| ||| |||||||||||  | |||| ||| |||||||| || |||||||||| |||||||| |||||||||||||| |||  ||||||||||||    
T  19219397 tgttgatgacgaagcatcatatgatacttttagctgtgtttttagtatttttctttgcttttgaagataaataagatgagagttattggagttgtcaatg 19219298  T
Q  171 gtttgaggaacata 184  Q
    ||||||||| ||||    
T  19219297 gtttgaggagcata 19219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 21017832 - 21017919
Alignment:
Q  97 ttttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 184  Q
    ||||||| |||||||||| || ||||||||||||||||||| |||||||||||||| || | |||||| ||||  |||||||||||||    
T  21017832 ttttttgttatgtttttagtatttttctttgcatttgaagaaaaataagatgagagttagaggagttggcaataatttgaggaacata 21017919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 12573231 - 12573328
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    ||||||||||| ||||||  | |||||||||| ||||||| ||||||||| |||||||||||||||||||| || | || |||||||||||||||||||    
T  12573231 agcatcatatgacattttg-gttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 12573328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 13549695 - 13549792
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    ||||||||||| ||||||  | |||||||||| ||||||| ||||||||| |||||||||||||||||||| || | || |||||||||||||||||||    
T  13549695 agcatcatatgacattttg-gttatgtttttagtactttttctttgcattagaagacaaataagatgagagttagatgatttgtcaatggtttgaggaa 13549792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 12409420 - 12409516
Alignment:
Q  104 ctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 200  Q
    |||| |||||| ||||||| |||| ||||||||| ||||||  || |||||| |||||||||||||||||||| ||||||| |||||| || |||||    
T  12409420 ctatatttttagtacttttatttgtatttgaagaaaaataacttgggagataaaagagttgtcaatggtttgaagaacatattgtattattttcact 12409516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 16970178 - 16970280
Alignment:
Q  79 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagg 178  Q
    |||||||| ||||||  ||||||  ||||||||||| | |||||||||| ||||||| ||||||||| |||||| |||| |||||||| |||||| ||||    
T  16970178 acggagca-catatgatatttttgactatgtttttagtgcttttctttgtatttgaacacaaataagttgagagttatatgagttgtcgatggttcgagg 16970276  T
Q  179 aaca 182  Q
    ||||    
T  16970277 aaca 16970280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 11521107 - 11521189
Alignment:
Q  110 ttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    ||||||||||||| | ||||||||||||| |||||||||||| | |  | |||||||||||||||||||||||||| ||||||    
T  11521107 ttttaatactttttcattgcatttgaagaaaaataagatgagcgttggaggagttgtcaatggtttgaggaacatattgtatt 11521189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 17637034 - 17637108
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagat 147  Q
    ||||| ||||||||||||||| ||||||| ||||||||| || |||||||||||| | || ||||||||||||||    
T  17637034 ttgatgacggagcatcatatgacatttttggctatgtttatattacttttctttgtaattaaagacaaataagat 17637108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 25883080 - 25883164
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||| ||||||||||||| ||||||||||||||  | |||||||||||||  ||||||||||||| | |||| || ||||||||    
T  25883080 ttttcattgcatttgaagaaaaataagatgagagtcagaagagttgtcaattttttgaggaacatattatattgttttcactcga 25883164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 8402725 - 8402625
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    ||||||||||||  |||||   |||||||||||    ||| |||||||||||||| |||||||||||  |  || | |||||||||||||||||||||||    
T  8402725 gagcatcatatgatattttagactatgtttttatgtatttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggtttgaggaac 8402626  T
Q  182 a 182  Q
    |    
T  8402625 a 8402625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 10341763 - 10341853
Alignment:
Q  109 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 200  Q
    |||||| ||||||||| ||||||||||  ||||||||||| ||  || | ||||||||||||| |||||||||| | |||||| || |||||    
T  10341763 tttttagtacttttctctgcatttgaaatcaaataagatgtgaattagaggagttgtcaatgg-ttgaggaacaaattgtattgttttcact 10341853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 10303427 - 10303495
Alignment:
Q  109 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgag 177  Q
    |||||| ||||||||| | ||||||||  ||||||||||| ||  || | |||||||||||||||||||    
T  10303427 tttttagtacttttctctacatttgaaatcaaataagatgtgaattagaggagttgtcaatggtttgag 10303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 18065833 - 18065877
Alignment:
Q  159 gagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||||||||||||||||| |||||| |||||| || ||||||||    
T  18065833 gagttgtcaatggtttgagaaacatattgtattgttttcactcga 18065877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 21505322 - 21505193
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| |||||||||||||||  |||||| |||||||||||| || |||||||||||||||||||||||||||||||||| || |  ||||||||||||||    
T  21505322 tgatgacggagcatcatatgatatttttggctatgtttttagtatttttctttgcatttgaagacaaataagatgagagttagagtagttgtcaatggtt 21505223  T
Q  174 tgaggaacataatgtattcttctcactcga 203  Q
    |||||| |||| |||||| || ||||||||    
T  21505222 tgaggagcatattgtattgttttcactcga 21505193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 25473966 - 25474079
Alignment:
Q  71 tgttgattacggagcatcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaat 169  Q
    ||||||| || |||||||||||| ||||||  |||||||||||| ||| |||| ||| ||||||||||||||||||||||||| || | |||||||||||    
T  25473966 tgttgatgacagagcatcatatgacattttg-gctatgtttttagtacattttattttcatttgaagacaaataagatgagagttagaggagttgtcaat 25474064  T
Q  170 ggtttgaggaacata 184  Q
     ||||||||||||||    
T  25474065 tgtttgaggaacata 25474079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 28278597 - 28278480
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    ||||||||||||  ||||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||| || | || || |||||||||||| ||||    
T  28278597 gagcatcatatgatattttttgctatgtttt-agtacttttctttgcatttgaaggcaaataagaagagagttagaggatttctcaatggtttgaagaac 28278499  T
Q  182 ataatgtattcttctcact 200  Q
    ||| |||||| || |||||    
T  28278498 atagtgtattattttcact 28278480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 32619586 - 32619682
Alignment:
Q  86 atcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    ||||||||  |||||| ||||| |||||| |||||||||||||||||||||||||||||  ||||||||| | ||||||| ||||||| ||||||||    
T  32619586 atcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaataacttgagagatagaggagttgttaatggttagaggaaca 32619682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 30998750 - 30998829
Alignment:
Q  121 ttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcact 200  Q
    |||||||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||| || |||||    
T  30998750 ttctttgcctttgaagacaaataagatgagagttagatgagttgtcaatggtttgaggaacatattgtattgttttcact 30998829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 35707743 - 35707861
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||| ||||||   ||||||||||| ||||||| ||||| |||||||||||||||||||||||| || |  |||||||||||||||||| ||    
T  35707743 gagcatcatatgacattttga-ctatgtttttagtactttttctttgtatttgaagacaaataagatgagagttagagaagttgtcaatggtttgagaaa 35707841  T
Q  181 cataatgtattcttctcact 200  Q
    |||  |||||| || |||||    
T  35707842 catgttgtattgttttcact 35707861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 16593890 - 16593827
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    |||| |||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  16593890 ttttttttgcatttgaagacaaataagattagagttataggagttgtcaatggtttgatgaaca 16593827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 200
Target Start/End: Complemental strand, 19949714 - 19949611
Alignment:
Q  98 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttct 196  Q
    ||||| ||||||||||| ||||||| ||||| ||||||||| |||||| |||||||||  | ||||||| ||| |||||||||||||| |||||| || |    
T  19949714 ttttttctatgtttttagtactttttctttgtatttgaagataaataacatgagagattgaggagttgttaatagtttgaggaacatattgtattatttt 19949615  T
Q  197 cact 200  Q
    ||||    
T  19949614 cact 19949611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 31914095 - 31914045
Alignment:
Q  95 cattttttgctatgtttttaatacttttctttgcatttgaagacaaataag 145  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||    
T  31914095 cattttttgctatgtttttagtatttttctttgcatttgaagacaaataag 31914045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 1733042 - 1733149
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    ||||||||||| ||||||  | |||||||||| ||||||| ||| ||||||||||||||| ||||||||| || | ||||||||||||  ||||| ||||    
T  1733042 agcatcatatgacatttta-gttatgtttttagtactttttttttcatttgaagacaaatgagatgagagttagaggagttgtcaatgagttgagaaaca 1733140  T
Q  183 taatgtatt 191  Q
     | ||||||    
T  1733141 aattgtatt 1733149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 35031701 - 35031763
Alignment:
Q  141 ataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||||||||||||| | ||||||| |||||||||||||||||| |||||| || ||||||||    
T  35031701 ataagatgagagatagaggagttgttaatggtttgaggaacatattgtattgttttcactcga 35031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 18236486 - 18236377
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggt 172  Q
    ||||| |||||||||||||||  ||||| ||||||||||||| |  |||||||||||||||||| |||| ||  ||  |  ||||  |||||||||||||    
T  18236486 ttgatgacggagcatcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggt 18236387  T
Q  173 ttgaggaaca 182  Q
    ||||| ||||    
T  18236386 ttgagaaaca 18236377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 21844766 - 21844703
Alignment:
Q  120 tttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 183  Q
    |||||||||||||||||||||||||| ||  |  || | |||||||||||||||| ||||||||    
T  21844766 tttctttgcatttgaagacaaataagttgtaatttagaggagttgtcaatggttttaggaacat 21844703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 18897929 - 18898052
Alignment:
Q  80 cggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagga 179  Q
    |||| ||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||| ||||    
T  18897929 cggatcatcatatgacatttttggctgtgtttttactacttttctttgcatttgaagacaaataagttgagagatagatgatttgtcaatggtttaagga 18898028  T
Q  180 acataatgtattcttctcactcga 203  Q
    ||||| |||||| || ||||||||    
T  18898029 acatattgtattgttttcactcga 18898052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 12111505 - 12111398
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  12111505 gagcatcatatgacattttttgttatgtttttagtacttttatttgcatttgaagacaaa-aagatgaga-atagaggagttgtcaatggtttgaggaac 12111408  T
Q  182 ataatgtatt 191  Q
    ||| ||||||    
T  12111407 atattgtatt 12111398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 1676478 - 1676363
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| ||| ||||||||||| ||||||| | ||| |||||  ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||    
T  1676478 tgatgacgaagcatcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtt 1676379  T
Q  174 tgaggaacataatgta 189  Q
    ||||||||||| ||||    
T  1676378 tgaggaacatattgta 1676363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 1683006 - 1682891
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| ||| ||||||||||| ||||||| | ||| |||||  ||||||||||| |||||||||||||||||||||| ||||| | |||||||||||||||    
T  1683006 tgatgacgaagcatcatatgacatttttggttatattttttgtacttttctttacatttgaagacaaataagatgaaagatagaggagttgtcaatggtt 1682907  T
Q  174 tgaggaacataatgta 189  Q
    ||||||||||| ||||    
T  1682906 tgaggaacatattgta 1682891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 5906879 - 5906774
Alignment:
Q  98 tttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctc 197  Q
    ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| || | || ||||||||||||||||||||||| | |||| || ||    
T  5906879 tttttgctatgtttttagtacttttatttgcatttgaagacaaacaagatgagagttagaggaattgtcaatggtttgaggaacatattatattgttttc 5906780  T
Q  198 actcga 203  Q
    ||||||    
T  5906779 actcga 5906774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 25315415 - 25315288
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaa-tacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatgg 171  Q
    ||||| || |||||||||||| ||||||  | ||||||||| | ||||||||||| |||||||||| ||||||||||||||||| | ||||||||||||     
T  25315415 ttgatgaccgagcatcatatgacatttta-gttatgttttttagtacttttctttacatttgaagataaataagatgagagatagaggagttgtcaatgc 25315317  T
Q  172 tttgaggaacataatgtattcttctcact 200  Q
    ||||||||||||| |||||| || |||||    
T  25315316 tttgaggaacatattgtattgttttcact 25315288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 153
Target Start/End: Original strand, 15192143 - 15192214
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagaga 153  Q
    |||||||||||| ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  15192143 gagcatcatatgacattttttgttatgtttttcgtacttttctttgcatttgaagacaaataagatgagaga 15192214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 34864452 - 34864367
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||| |||||||||| |||||||||||| ||||||||||||||||||| | || || | |||||||||||||||||||||||    
T  34864452 attttttgttatgtttttagtacttttctttgtatttgaagacaaataagataaaagttagaggagttgtcaatggtttgaggaac 34864367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 1696741 - 1696652
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggttt 174  Q
    ||||||||||| ||||||| ||||| |||  | ||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  1696741 agcatcatatgacatttttggctatattt--agtacttttatttacatttgaagacaaataagatgagagatataggagttgtcaatggttt 1696652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 27302745 - 27302839
Alignment:
Q  109 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||||||| ||||| ||||||||||||||||||| ||||| ||||| |  ||||||||||||||||||||||||  |||||| || ||||||||    
T  27302745 tttttaataattttcgttgcatttgaagacaaatatgatgatagatagagaagttgtcaatggtttgaggaacattttgtattgttttcactcga 27302839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 9783158 - 9783039
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||| ||||||   ||||||||||| ||||||| |||| ||||||||| ||||| ||||||||| || | ||||||||||| ||||||||||    
T  9783158 gagcatcatatgacattttgc-ctatgtttttagtactttttctttacatttgaaggcaaatgagatgagagttagaggagttgtcaatagtttgaggaa 9783060  T
Q  181 cataatgtattcttctcactc 201  Q
    |||| |||||| || ||||||    
T  9783059 catattgtattgttttcactc 9783039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 4953650 - 4953741
Alignment:
Q  110 ttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactc 201  Q
    ||||| || ||||||||| ||||||||| |||||||||| |||||| | ||||||| |||||||||||||||||| |||||| || ||||||    
T  4953650 ttttagtatttttctttgtatttgaagagaaataagatgtgagataaaggagttgttaatggtttgaggaacatattgtattgttttcactc 4953741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 10320394 - 10320273
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||||||| ||||||| |||||||||||| || |||||||| |||||||||| ||| ||| | || | || | ||||||| ||| ||| ||| |||    
T  10320394 gagcatcatatgacatttttcgctatgtttttagtaattttctttccatttgaagataaaaaagtttagcggtagacgagttgttaatagttagagaaac 10320295  T
Q  182 ataatgtattcttctcactcga 203  Q
    ||| ||||||||| ||||||||    
T  10320294 atattgtattcttttcactcga 10320273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 22119589 - 22119686
Alignment:
Q  85 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    |||||||||  ||||| ||||||||||||| |  |||||||||||||||||| ||||| ||| |  |  |||| ||||||||||||||||||||||||    
T  22119589 catcatatgatattttatgctatgtttttagttattttctttgcatttgaaggcaaattagaagttatttataggagttgtcaatggtttgaggaaca 22119686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 33518995 - 33519044
Alignment:
Q  97 ttttttgctatgtttttaatacttttctttgcatttgaagacaaataaga 146  Q
    ||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  33518995 ttttttgctatgtttttaattattttctttgcatttgaaggcaaataaga 33519044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 25050231 - 25050173
Alignment:
Q  91 atgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatga 149  Q
    |||| |||||| |||||||||||| || |||| |||| |||||||||||||||||||||    
T  25050231 atgctatttttggctatgtttttagtatttttatttgtatttgaagacaaataagatga 25050173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 5125581 - 5125613
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgaga 151  Q
    |||| ||||||||||||||||||||||||||||    
T  5125581 ttttttttgcatttgaagacaaataagatgaga 5125613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 9e-32; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 86 - 203
Target Start/End: Original strand, 26657420 - 26657537
Alignment:
Q  86 atcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataa 185  Q
    ||||||||  ||||||  ||||||||||| |||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||| ||||    
T  26657420 atcatatgatatttttgactatgtttttattacttttctttgcatttgaagacaaatatgttgagagatagaggagttgtcaatggtttgaggaatataa 26657519  T
Q  186 tgtattcttctcactcga 203  Q
    |||||| || ||||||||    
T  26657520 tgtattgttttcactcga 26657537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 21451989 - 21451869
Alignment:
Q  83 agcatcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    ||||||||||| ||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  21451989 agcatcatatgacattttg-gctatgtttttagtacgttttctttgcatttgaagacaaataagatgagagatagaagagttgtcaatggtat-aggaac 21451892  T
Q  182 ataatgtattcttctcactcgac 204  Q
    ||| |||||| || |||||||||    
T  21451891 atattgtattattttcactcgac 21451869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 30675423 - 30675545
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttg-catttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||  |||||| ||||||||||||||| |  || | ||||||||||||||||||||||    
T  30675423 gagcatcatatgacattttttgctatgtttttagaacttttctttttcatttgtagacaaataagatgaaaattagaggagttgtcaatggtttgaggaa 30675522  T
Q  181 cataatgtattcttctcactcga 203  Q
    |||| |||||| || ||||||||    
T  30675523 catattgtattgttttcactcga 30675545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 12810276 - 12810371
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    ||||||| ||||||||||| |||||||||||  |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||    
T  12810276 attttttactatgtttttagtacttttctttatatttaaagacaaataagttgagagatagaggagttgtcaatggtttgaggaacatattgtatt 12810371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 96 - 203
Target Start/End: Original strand, 50047135 - 50047242
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttc 195  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |  || | |||||||||||| |||||| |||||| |||||| ||     
T  50047135 atttttggctatgtttttgatacttttctttgcatttgaagacaaataagatgaaaagtagaggagttgtcaatgatttgagaaacatattgtattgttt 50047234  T
Q  196 tcactcga 203  Q
    ||||||||    
T  50047235 tcactcga 50047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 11770169 - 11770049
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||| |||  ||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||| || |  | ||||||||||||| ||||||    
T  11770169 gagcatcacatgatatttttgtctatgtttttaatactattctttgcatttgaagataaataagatgagagttagagaatttgtcaatggtttaaggaac 11770070  T
Q  182 ataatgtattcttctcactcg 202  Q
    ||| |||||| || |||||||    
T  11770069 atattgtattgttttcactcg 11770049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 8247832 - 8247730
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||||| ||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||| || | ||| | ||||||||||||||||    
T  8247832 gagcatcatatgacattttga-ctatgtttttaataccttttctttgcatttgaagacaaataagatgagagttagaggagatatcaatggtttgaggaa 8247734  T
Q  181 cata 184  Q
    ||||    
T  8247733 cata 8247730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 74 - 191
Target Start/End: Original strand, 23223343 - 23223460
Alignment:
Q  74 tgattacggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtt 173  Q
    |||| |||||||||||||||   ||||| |||||||||| | |||||||||||||||||  |||||| ||||||| ||| || | |||||||||||||||    
T  23223343 tgatgacggagcatcatatgatgtttttggctatgttttaagtacttttctttgcattttgagacaattaagatgggagttagaggagttgtcaatggtt 23223442  T
Q  174 tgaggaacataatgtatt 191  Q
    ||||||||| | ||||||    
T  23223443 tgaggaacacattgtatt 23223460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 98 - 184
Target Start/End: Complemental strand, 12424074 - 12423987
Alignment:
Q  98 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 184  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||||||    
T  12424074 ttttggctatgtttttagtactttttctttgcatttgaagacaaataagatgagagacagaggcgttgttaatggtttgaggaacata 12423987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 23519903 - 23519821
Alignment:
Q  109 tttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||| || |||||| ||| |||||||||||||| ||||||    
T  23519903 tttttagtacttttctttgcttttgaagacaaatatgatgagagatagaaaagttgttaatagtttgaggaacatattgtatt 23519821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 25266514 - 25266399
Alignment:
Q  88 catatgccattttttgct-atgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataat 186  Q
    |||||| ||||||||| | ||||||||| |||||||||||||||||||||||| | ||||| ||||||| |  ||||||||||||| |||  |||||| |    
T  25266514 catatgacattttttggttatgtttttagtacttttctttgcatttgaagacaga-aagataagagatagagaagttgtcaatggtatgaaaaacatatt 25266416  T
Q  187 gtattcttctcactcga 203  Q
    ||||| || ||||||||    
T  25266415 gtattgttttcactcga 25266399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 18301165 - 18301071
Alignment:
Q  97 ttttttgctatgtttttaatacttttctttgcatttgaagacaa--ataagatgagagatataagagttgtcaatggtttgaggaacataatgta 189  Q
    ||||| |||||||||||  |||||||||||||||||||||||||  | || ||||||| |||| | |||||||||||||||||||| ||| ||||    
T  18301165 tttttagctatgtttttggtacttttctttgcatttgaagacaaacaaaaaatgagagttataggggttgtcaatggtttgaggaatatattgta 18301071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 25730730 - 25730649
Alignment:
Q  97 ttttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagga 179  Q
    |||||||||||||||| | |||||||||||||||||||| |||||||||||||||| || | | | ||||||||| |||||||    
T  25730730 ttttttgctatgtttt-agtacttttctttgcatttgaaaacaaataagatgagagttagagggggtgtcaatggcttgagga 25730649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 25778009 - 25777936
Alignment:
Q  79 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagag 152  Q
    |||||| ||||||||  ||||||||||||||| ||| | |||||||||||||||||| | ||||||||||||||    
T  25778009 acggagtatcatatgatattttttgctatgttcttagtgcttttctttgcatttgaaaataaataagatgagag 25777936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 24903433 - 24903361
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtatt 191  Q
    ||||||||||||||||||||||||| |||||||  ||   |||||||||||| ||||||||||||| ||||||    
T  24903433 ttttctttgcatttgaagacaaatatgatgagaattagtggagttgtcaatgatttgaggaacatattgtatt 24903361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 30781715 - 30781783
Alignment:
Q  98 tttttgctatgtttttaatactttt-ctttgcatttgaagacaaataagatgagagatataagagttgt 165  Q
    ||||||||||||||||| || |||| |||||||||||||||||||||||||||||| || | |||||||    
T  30781715 tttttgctatgtttttagtaatttttctttgcatttgaagacaaataagatgagagttagaggagttgt 30781783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 34381671 - 34381750
Alignment:
Q  105 tatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 184  Q
    |||||||||| || |||| ||||||||||||| |||||||||||  |  || | ||||||| |||||||||| |||||||    
T  34381671 tatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttgaagaacata 34381750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 191
Target Start/End: Original strand, 30355263 - 30355375
Alignment:
Q  79 acggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagg 178  Q
    |||||||||||||||  |||||| |||||||||||| |||||||  ||||||||||||  |||||||||||||| || |  |||||||||||||||||      
T  30355263 acggagcatcatatgatatttttggctatgtttttagtacttttacttgcatttgaaggtaaataagatgagagttagagaagttgtcaatggtttgata 30355362  T
Q  179 aacataatgtatt 191  Q
    |||||| ||||||    
T  30355363 aacatattgtatt 30355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 13759602 - 13759505
Alignment:
Q  107 tgtttttaatacttttc-tttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattcttctcactcga 203  Q
    ||||||||||||||||  |||| ||||||||| |||||||||||||| || | |||||||||||||||||||||||||| || ||| || ||||||||    
T  13759602 tgtttttaatactttttatttgtatttgaagataaataagatgagagttagaggagttgtcaatggtttgaggaacatattgaattgttttcactcga 13759505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 15576338 - 15576268
Alignment:
Q  81 ggagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgaga 151  Q
    |||||||||||||  |||||| |||||||||||| |||||||||||| |||| |||||||||| |||||||    
T  15576338 ggagcatcatatgatatttttggctatgtttttagtacttttctttgaatttaaagacaaataggatgaga 15576268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 15574902 - 15574965
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 183  Q
    |||||||||||||||||||||||||||||||||  || | || |||||||| |||||||||||||    
T  15574902 ttttctttgcatttgaagacaaataagatgagatttagaggaattgtcaat-gtttgaggaacat 15574965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 14924571 - 14924492
Alignment:
Q  103 gctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaaca 182  Q
    |||||||||||| |  |||||||||||||||||| ||||||| |||  |  || | ||||||||||||||||||||||||    
T  14924571 gctatgtttttagttattttctttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaaca 14924492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 16527836 - 16527951
Alignment:
Q  82 gagcatcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaac 181  Q
    |||||||||||   |||||| |||||||||||| ||||||||||||      ||||||||||||||||||| || | ||||||||  ||||||||| | |    
T  16527836 gagcatcatataatatttttggctatgtttttagtacttttctttg------aagacaaataagatgagagttagaggagttgtcggtggtttgagtacc 16527929  T
Q  182 ataatgtattcttctcactcga 203  Q
    ||| | |||| || ||||||||    
T  16527930 atattatattgttttcactcga 16527951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 16387400 - 16387325
Alignment:
Q  105 tatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaa 180  Q
    |||||||||| || |||||||||  ||||||||| |||||||||  |  || | ||||||||||||||||||||||    
T  16387400 tatgtttttagtagttttctttgtgtttgaagacgaataagatgtaatttagatgagttgtcaatggtttgaggaa 16387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 15998454 - 15998563
Alignment:
Q  85 catcatatgccattttttgctatgtttttaatac-ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 183  Q
    ||||||||| ||||||  |||||||||||  ||| ||||||||||||||||||  |||| | ||||||| || | ||||  || ||||||||||||| ||    
T  15998454 catcatatgacattttg-gctatgttttttgtacgttttctttgcatttgaaggaaaatgatatgagagttagaggagtgttccatggtttgaggaaaat 15998552  T
Q  184 aatgtattctt 194  Q
    | |||||||||    
T  15998553 attgtattctt 15998563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 12974269 - 12974318
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaatactttt 122  Q
    ||||| |||||||||||||||  ||||||||||||| ||||| |||||||    
T  12974269 ttgatgacggagcatcatatgatattttttgctatggttttagtactttt 12974318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 20495947 - 20495867
Alignment:
Q  103 gctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 183  Q
    |||||||||||| || ||||||||| |||||||| ||| ||||| |  | ||| |  |||| |||||||||||||||||||    
T  20495947 gctatgtttttagtaattttctttgtatttgaaggcaattaagaggtcatatagagaagttatcaatggtttgaggaacat 20495867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 32930610 - 32930546
Alignment:
Q  119 ttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacat 183  Q
    |||| ||||||||||||| |||||||||||  |  || | ||||||||||||||||| |||||||    
T  32930610 ttttttttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacat 32930546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 22717 - 22599
Alignment:
Q  85 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 184  Q
    |||||||| |||||||| |||||||||||  ||||||| |||||||||||||||||| |||    |||||| ||||||||| ||| ||||||| ||||||    
T  22717 catcatataccatttttggctatgttttttgtacttttatttgcatttgaagacaaacaagtgtggagataaaagagttgttaattgtttgagtaacata 22618  T
Q  185 atgtattcttctcactcga 203  Q
     |||||| || ||||||||    
T  22617 ttgtattgttttcactcga 22599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 27108 - 27032
Alignment:
Q  103 gctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgagga 179  Q
    |||||||||||| |||||||||||||||||||||| |||||||||   || || |||||||||| |||| |||||||    
T  27108 gctatgtttttagtacttttctttgcatttgaagataaataagatagaagttacaagagttgtctatggattgagga 27032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 446936 - 447015
Alignment:
Q  73 ttgattacggagcatcatatgccattttttgctatgtttttaatacttttc-tttgcatttgaagacaaataagatgagag 152  Q
    ||||| || ||||||||||||  |||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  446936 ttgatgacagagcatcatatgatattttt-gctatgtttttagtacttttcctttacatttgaagacaaataagatgagag 447015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 13232 - 13134
Alignment:
Q  96 attttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacataatgtattctt 194  Q
    |||||| | |||||||||| ||||||| ||| ||| | ||||||||||||||||||| || | || || ||||||||||| |||  ||| |||||||||    
T  13232 atttttagttatgtttttagtacttttattttcatattaagacaaataagatgagagttagaggatttttcaatggtttgtggattatattgtattctt 13134  T

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Target: scaffold0386; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 204
Target Start/End: Complemental strand, 8881 - 8762
Alignment:
Q  85 catcatatgccattttttgctatgtttttaatacttttctttgcatttgaagacaaataagatgagagatataagagttgtcaatggtttgaggaacata 184  Q
    |||||||||  |||||| | ||| |||||| ||||||| ||| ||||| |||| |||||||||||| | || | || |||||||||||| |||||   ||    
T  8881 catcatatgatatttttggttatttttttagtacttttattttcattttaagaaaaataagatgagggttagaggatttgtcaatggttagaggattgta 8782  T
Q  185 atgtattcttctcactcgac 204  Q
     |||||| || |||||||||    
T  8781 ttgtattgttttcactcgac 8762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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