View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16232_low_5 (Length: 553)
Name: NF16232_low_5
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 21)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 13162106 - 13161571
Alignment:
| Q |
1 |
cgattcttgtatgaaagtataacattttcccttggtgaagagcaaagcaaatgcagcaatgaagaaatggaccaatgtattttaggcatggtaaaagccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13162106 |
cgattcttgtatgaaagtataacattttcccttggtgaagagcaaagcaaatgcagcaacgaagaaatggaccaatgttttttaggcatggtaaaagccc |
13162007 |
T |
|
| Q |
101 |
taaagaaagaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaattagttcagc |
200 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
13162006 |
taaagaaagaaggatatggaaagggggaaatcagtgagaagtatcttagagatactgcactcactatggtgtttgccggaaatggttcaattagttcagc |
13161907 |
T |
|
| Q |
201 |
tctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcgg |
300 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161906 |
tctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcgg |
13161807 |
T |
|
| Q |
301 |
attattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13161806 |
attattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctataccttttgagcatatct |
13161707 |
T |
|
| Q |
401 |
gtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161706 |
gtgcaatcaaatccgatatactacctagtggagaacgtattagtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatg |
13161607 |
T |
|
| Q |
501 |
gggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161606 |
gggggaagactgcatggaatttaagcctgagagatg |
13161571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 13094984 - 13094449
Alignment:
| Q |
1 |
cgattcttgtatgaaagtataacattttcccttggtgaagagcaaagcaaatgcagcaatgaagaaatggaccaatgtattttaggcatggtaaaagccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| ||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
13094984 |
cgattcttgtatgaaagtataacattttcccatggtgaagagcaaagtaagtgcagctatgaagaaatgtaccaatgttttttaggcatggtaaaagccc |
13094885 |
T |
|
| Q |
101 |
taaagaaagaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaattagttcagc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13094884 |
taaagaatgaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcatttactatgatatttgccggaaatggtacaattagttcagc |
13094785 |
T |
|
| Q |
201 |
tctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcgg |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||| |
|
|
| T |
13094784 |
tctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataattggttaacacgagaggattatcgg |
13094685 |
T |
|
| Q |
301 |
attattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatct |
400 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13094684 |
attactttgagggatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtaccttttgagcatatct |
13094585 |
T |
|
| Q |
401 |
gtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatg |
500 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | | | || ||||||||||| |||||| |||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
13094584 |
gtgcaatcaaatctgatatactacctagtggataccatgttactccaaatacaactttaatttactctttgtattctatgggaaggatggaacaaatatg |
13094485 |
T |
|
| Q |
501 |
gggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13094484 |
gggagaagactgcatggaatttaagcctgagagatg |
13094449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 13130413 - 13129878
Alignment:
| Q |
1 |
cgattcttgtatgaaagtataacattttcccttggtgaagagcaaagcaaatgcagcaatgaagaaatggaccaatgtattttaggcatggtaaaagccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13130413 |
cgattcttgtatgaaagtataacattttcccatggtgaagagcaaagcaagtgcagcgatgaagaaatggaccaatgttttttaggcatggtaaaagccc |
13130314 |
T |
|
| Q |
101 |
taaagaaagaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaattagttcagc |
200 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||| |||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
13130313 |
taaagaatgaaggatatggaaagggtgaaatcagtgagaagtatcttagagatactgcatttactatgttttttgccggaaatggttcaattagttcagc |
13130214 |
T |
|
| Q |
201 |
tctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcgg |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
13130213 |
tctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggttaacacaagagggtaatcgg |
13130114 |
T |
|
| Q |
301 |
attattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatct |
400 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13130113 |
attactttgaggcatgtggatcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatct |
13130014 |
T |
|
| Q |
401 |
gtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatg |
500 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| | | | || |||||||||||| ||| || |||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
13130013 |
gttcaatcaaatctgatatactacctagtggataccatgttagtccaaatacaactttgatttactctttgtattctatgggaaggatggaacaaatatg |
13129914 |
T |
|
| Q |
501 |
gggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13129913 |
gggagaagactgcatggaatttaagcctgagagatg |
13129878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 136 - 536
Target Start/End: Complemental strand, 13007650 - 13007250
Alignment:
| Q |
136 |
gagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaacttatc |
235 |
Q |
| |
|
||||||||||||||||||| || || ||| | | || || |||||||| ||||||||||||| ||||||||||| |||||||||| |||||||| ||| |
|
|
| T |
13007650 |
gagaagtatcttagagacaatgtcctcactctctttttagcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatc |
13007551 |
T |
|
| Q |
236 |
ctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtggttcttgataagctagt |
335 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||| |||| ||||||||||| |||| || | |||||| ||||||| ||||||||||||||| |
|
|
| T |
13007550 |
ctattgtggaagccaaaattattcaagaaatcaaagataactggcccacacaagaggagaatcagactcctttgagagatgtggatcttgataagctagt |
13007451 |
T |
|
| Q |
336 |
atacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagag |
435 |
Q |
| |
|
||||||||||||||| |||||||| || | ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13007450 |
gtacctccatggagctctatgtgaagccatgaggctttatcctcctgtaccttttgagcatatctgtgcaatcaattccgatatactacctagtggagag |
13007351 |
T |
|
| Q |
436 |
cgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagat |
535 |
Q |
| |
|
||| || ||||||||||||| ||| |||||||| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13007350 |
cgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagagat |
13007251 |
T |
|
| Q |
536 |
g |
536 |
Q |
| |
|
| |
|
|
| T |
13007250 |
g |
13007250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 92 - 536
Target Start/End: Complemental strand, 13101494 - 13101050
Alignment:
| Q |
92 |
taaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaat |
191 |
Q |
| |
|
||||||| |||| ||| |||||| ||||||||| ||||| |||||||||||||||||||| || | | ||| | | || || |||||||| || | |
|
|
| T |
13101494 |
taaaagcactaacgaaggaaggatctggaaagggggaaatggatgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcccagt |
13101395 |
T |
|
| Q |
192 |
tagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagag |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||| ||||| |||||||| ||||||||||| || | ||||||||| |
|
|
| T |
13101394 |
tagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag |
13101295 |
T |
|
| Q |
292 |
gataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttg |
391 |
Q |
| |
|
|| |||| |||| || ||| |||| | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
13101294 |
gagaatcagattccttcgagagatgagtatcttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcctgtaccttttg |
13101195 |
T |
|
| Q |
392 |
agcatatctgtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatgga |
491 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||| ||| |||||||| |||| ||||||| |||||||| |
|
|
| T |
13101194 |
agcatatatgttcaatcaaatccgatatacttcctagtggagagcgttttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatgga |
13101095 |
T |
|
| Q |
492 |
acaactatggggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13101094 |
acaaatatggggagaagactgcatggaatttaagcctgagagatg |
13101050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 135 - 536
Target Start/End: Original strand, 13069917 - 13070318
Alignment:
| Q |
135 |
tgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaacttat |
234 |
Q |
| |
|
|||||||||||||||||||| |||||| || | | || || |||||||| ||| ||| ||||| ||||||||||| |||||||||| |||||||| || |
|
|
| T |
13069917 |
tgagaagtatcttagagacaatgcactctctctctttttagcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcat |
13070016 |
T |
|
| Q |
235 |
cctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtggttcttgataagctag |
334 |
Q |
| |
|
||||||||||||| ||||| |||||||| || |||||||| |||| ||||||||||| |||| || | || ||| ||||||| ||||||||| |||| |
|
|
| T |
13070017 |
cctattgtggaagccaaaattattcaagaaataaaagataactggcccacacaagaggagaatcagactccttggagagatgtggatcttgataatctag |
13070116 |
T |
|
| Q |
335 |
tatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggaga |
434 |
Q |
| |
|
| ||||| ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13070117 |
tgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatactacctagtggaga |
13070216 |
T |
|
| Q |
435 |
gcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagaga |
534 |
Q |
| |
|
|||| || ||||||||||||| ||| |||||||| |||| ||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13070217 |
gcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatggaacaaatatggggagaagactgcatggaatttaagcctgagaga |
13070316 |
T |
|
| Q |
535 |
tg |
536 |
Q |
| |
|
|| |
|
|
| T |
13070317 |
tg |
13070318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 192 - 536
Target Start/End: Complemental strand, 13204853 - 13204509
Alignment:
| Q |
192 |
tagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagag |
291 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||||| |||| ||| ||||||||||||||| ||||| |||||||| ||||||||||| || | ||||||||| |
|
|
| T |
13204853 |
tagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag |
13204754 |
T |
|
| Q |
292 |
gataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttg |
391 |
Q |
| |
|
|| |||| |||| || ||| |||| | ||||||||||||||| ||||| |||||||||||||||||| |||| || |||||||||||| ||||||||| |
|
|
| T |
13204753 |
gagaatcagattccttcgagagatgagtatcttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttg |
13204654 |
T |
|
| Q |
392 |
agcatatctgtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatgga |
491 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |||||||| |||| ||||||| |||||||| |
|
|
| T |
13204653 |
agcatatatgtgcaatcaaatccgatatactacctagtggagagcgtgttagtccaaatacaaggttattgtactctttgtacgctatgggaaggatgga |
13204554 |
T |
|
| Q |
492 |
acaactatggggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13204553 |
acaaatatggggagaagactgcatggaatttaagcctgagagatg |
13204509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 133 - 536
Target Start/End: Original strand, 30367847 - 30368250
Alignment:
| Q |
133 |
agtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaactt |
232 |
Q |
| |
|
|||||||||||||||||||||| |||||| || | | || || || ||||| ||| |||||||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
30367847 |
agtgagaagtatcttagagacaatgcactctctcttttgttagcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactc |
30367946 |
T |
|
| Q |
233 |
atcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagaggataatcggattattttgagggatgtggttcttgataagct |
332 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||| || || || | || ||| |||| | || | || | ||||||||||| |
|
|
| T |
30367947 |
atcctattgtggaagccaaaattattcaagagatcaaagataattgtgtatcaaaacatgagaattggataacttcaatggtggaaagccttgataagct |
30368046 |
T |
|
| Q |
333 |
agtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtgga |
432 |
Q |
| |
|
||| |||||||||||||||||||||||| || | ||| | |||||| || |||||||||||| |||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
30368047 |
agtctacctccatggagctatatgtgaatccatgaggttgtatcctactgtaccttttgagcttatcagtgcaatcaaatctgatatactacctagtgga |
30368146 |
T |
|
| Q |
433 |
gagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgaga |
532 |
Q |
| |
|
||| | || |||||||||| | ||||| |||||| ||||| ||||||| ||||||||| || ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
30368147 |
gagaatgttagtccaaataccaagttaatttactctttgtatgctatgggaaggatggaaaaaatatggggagaagattgcatggaatttaagcctgaga |
30368246 |
T |
|
| Q |
533 |
gatg |
536 |
Q |
| |
|
|||| |
|
|
| T |
30368247 |
gatg |
30368250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 92 - 423
Target Start/End: Complemental strand, 19727647 - 19727316
Alignment:
| Q |
92 |
taaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaat |
191 |
Q |
| |
|
||||||| |||| ||| |||||| ||||||||| ||||| | |||||||||||||||||||| | ||| ||| | | || || |||||||| || | |
|
|
| T |
19727647 |
taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcccagt |
19727548 |
T |
|
| Q |
192 |
tagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggctaacacaagag |
291 |
Q |
| |
|
|||| ||| ||||||||||| ||| |||||| |||| ||| |||||||||| |||| ||||| |||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
19727547 |
tagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataactggcccacacaagag |
19727448 |
T |
|
| Q |
292 |
gataatcggattattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttg |
391 |
Q |
| |
|
|| || | || | |||||| ||||||| ||||||||||||||| |||||||| |||| | ||||| || |||| || |||||||||||| ||||||||| |
|
|
| T |
19727447 |
gagaaccagactcctttgagagatgtggatcttgataagctagtgtacctccacggagatctatgttaagccttgagactttatcctcctgtaccttttg |
19727348 |
T |
|
| Q |
392 |
agcatatctgtgcaatcaaatccgatatacta |
423 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |
|
|
| T |
19727347 |
agcatatatgtgcaatcaaatctcatatacta |
19727316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 178 - 536
Target Start/End: Original strand, 13244302 - 13244663
Alignment:
| Q |
178 |
ggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt |
277 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| || |||||| |||||||| ||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
13244302 |
ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataatt |
13244401 |
T |
|
| Q |
278 |
ggctaacacaagaggataatcggat---tattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggcttta |
374 |
Q |
| |
|
| |||||||||||||| ||| || || ||| | | | |||||||||| || ||||| |||||||| |||||||||||||| ||||| || |
|
|
| T |
13244402 |
gtctaacacaagaggagaatttaatcaataatttaaacgtggaaaagattgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctata |
13244501 |
T |
|
| Q |
375 |
tcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtat |
474 |
Q |
| |
|
||||||| | | ||| |||| | || || |||||||| |||||||||||||||||||| | | || |||||||||||| || || || ||| ||||| |
|
|
| T |
13244502 |
tcctcctctggcatttcagcacaagtgcgctatcaaatctgatatactacctagtggagaacatgttggtccaaatacaaagttgatatattctttgtat |
13244601 |
T |
|
| Q |
475 |
tctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
| ||||| |||||| ||||| ||||||| || || ||| |||||||||||||||| ||||| |
|
|
| T |
13244602 |
gcaatgggaaggatgcaacaaatatggggagatgattgcttggaatttaagcctgaaagatg |
13244663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 178 - 536
Target Start/End: Complemental strand, 13271997 - 13271636
Alignment:
| Q |
178 |
ggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt |
277 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||| || |||||| |||||||| |||||| |||||||| |||| | |||||||||||||||||| ||| |
|
|
| T |
13271997 |
ggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaagcaaaacttattcaagagatcaaagatcatt |
13271898 |
T |
|
| Q |
278 |
ggctaacacaagaggataatcggat---tattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggcttta |
374 |
Q |
| |
|
| |||||||||||||| ||| ||| || ||| | | || |||||||||| | ||||| |||| |||||||||||||||||| || ||||| |
|
|
| T |
13271897 |
gtctaacacaagaggagaatttgatcaataatttaaatgttgaaaacattgataagctgatttaccttcatgcagctatatgtgaaaccttgagacttta |
13271798 |
T |
|
| Q |
375 |
tcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtat |
474 |
Q |
| |
|
|||||||||||| ||||| || | |||||| | || || |||||||||||||||||| | | | || ||||||| |||| ||||| |||||| ||||| |
|
|
| T |
13271797 |
tcctcctataccatttgatcacaagtgtgcagttaattctgatatactacctagtggacaccatgttggtccaaacacaaagttaatatactctttgtat |
13271698 |
T |
|
| Q |
475 |
tctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
| ||||| || |||||||| ||||||| | || ||| |||| ||||||||||||||||| |
|
|
| T |
13271697 |
gcaatgggaagaatggaacatgtatggggtggtgattgcttggagtttaagcctgagagatg |
13271636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 322 - 536
Target Start/End: Original strand, 12963803 - 12964017
Alignment:
| Q |
322 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
421 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||| | ||||||||||||||||||||||| ||||| || | |||||||| ||||| |||||| |
|
|
| T |
12963803 |
cttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcagatatat |
12963902 |
T |
|
| Q |
422 |
tacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
521 |
Q |
| |
|
||||||||||||| | | || |||||||||||| || || || ||| ||||| | ||||| |||||||||||| ||||||| ||||| ||| ||||||| |
|
|
| T |
12963903 |
tacctagtggagaccatgttagtccaaatacaaagttgatatattctttgtatgcaatgggaaggatggaacaaatatggggagaagattgcttggaatt |
12964002 |
T |
|
| Q |
522 |
taagcctgagagatg |
536 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
12964003 |
taagcctgaaagatg |
12964017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 322 - 536
Target Start/End: Original strand, 13065141 - 13065355
Alignment:
| Q |
322 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
421 |
Q |
| |
|
|||||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||| ||||| | ||||| | | |||||||||| | ||||||| |
|
|
| T |
13065141 |
cttgataaactaatttacctccacggagctatatgtgaagccttaaggctttatcctcctgtacctatcgagcaaaagtttgcaatcaaagctgatatac |
13065240 |
T |
|
| Q |
422 |
tacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
521 |
Q |
| |
|
| |||||||||| | | | ||||||||||||| || | |||| | ||||||| ||||| |||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
13065241 |
ttcctagtggagtccatgtaagtccaaatacaaggatattatactatttgtattcaatgggaaggatggagaaaatatggggagaagactgcatggaatt |
13065340 |
T |
|
| Q |
522 |
taagcctgagagatg |
536 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13065341 |
taagcctgagagatg |
13065355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 181 - 536
Target Start/End: Original strand, 19278952 - 19279310
Alignment:
| Q |
181 |
aatggaacaattagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataattggc |
280 |
Q |
| |
|
||||||||||||||||| | ||||| ||||| || ||||| | |||||| |||||||||| |||| |||||| |||||||||||||| | ||| || |
|
|
| T |
19278952 |
aatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaaattattcaagagatcaaggttaactgtt |
19279051 |
T |
|
| Q |
281 |
taacacaagaggataatcggattat---tttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcc |
377 |
Q |
| |
|
||||| ||||||||||| ||| | ||| || | | |||||||||||||| || || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
19279052 |
taacaaaagaggataatttgatcacaaattttagtgtgaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatcc |
19279151 |
T |
|
| Q |
378 |
tcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattct |
477 |
Q |
| |
|
||| |||| ||||| || | |||||| | || ||||||||||||||||||||||| | | || ||| |||||||| ||||| |||||| ||||| | |
|
|
| T |
19279152 |
acctgtaccatttgaacacaagtgtgcagttaattccgatatactacctagtggagaccatgttagtctaaatacaaagttaatatactctttgtatgca |
19279251 |
T |
|
| Q |
478 |
atgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
||||| |||||||||||| ||||||| || || ||| | |||||| |||||||||||| |
|
|
| T |
19279252 |
atgggaaggatggaacaaatatggggtgatgattgcctagaatttcggcctgagagatg |
19279310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 322 - 536
Target Start/End: Original strand, 13080793 - 13081007
Alignment:
| Q |
322 |
cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgtgcaatcaaatccgatatac |
421 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| |||||||||| |||||| || || | ||| |||| | ||||| |||||||| |||| || |
|
|
| T |
13080793 |
cttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcggataaac |
13080892 |
T |
|
| Q |
422 |
tacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtattctatgggcaggatggaacaactatggggggaagactgcatggaatt |
521 |
Q |
| |
|
| ||||||||||| | | || |||||||||||| ||||| || ||| ||||| | ||||| |||||||| ||| ||||||| || || ||| |||| || |
|
|
| T |
13080893 |
ttcctagtggagaccatgttagtccaaatacaaagttaatatattctttgtatgcaatgggaaggatggagcaaatatggggagaggattgcttggagtt |
13080992 |
T |
|
| Q |
522 |
taagcctgagagatg |
536 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13080993 |
taagcctgagagatg |
13081007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 178 - 536
Target Start/End: Complemental strand, 13086518 - 13086157
Alignment:
| Q |
178 |
ggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt |
277 |
Q |
| |
|
|||| ||||||| ||||||||| ||| ||||||| | |||||| |||||||| || || ||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
13086518 |
ggaagtggaacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataatt |
13086419 |
T |
|
| Q |
278 |
ggctaacacaagaggataatcggat---tattttgagggatgtggttcttgataagctagtatacctccatggagctatatgtgaaaccttaaggcttta |
374 |
Q |
| |
|
| ||| |||| ||||||||| | | || ||| || | || ||| |||| ||||| ||||| |||||||||||||||||| | || |||||||| |
|
|
| T |
13086418 |
gtctatcacatgaggataatttggtcactaatttaagagttgaaaagcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggcttta |
13086319 |
T |
|
| Q |
375 |
tcctcctataccttttgagcatatctgtgcaatcaaatccgatatactacctagtggagagcgtatttgtccaaatacaagtttaatgtactctatgtat |
474 |
Q |
| |
|
||||||| |||| ||| |||| | |||||||||||| | |||||||||||||||||||| | || |||||||| | ||||| |||||| ||||| |
|
|
| T |
13086318 |
tcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatatactacctagtggagattatgttaaaccaaatactaagttaatatactctttgtat |
13086219 |
T |
|
| Q |
475 |
tctatgggcaggatggaacaactatggggggaagactgcatggaatttaagcctgagagatg |
536 |
Q |
| |
|
| ||||| |||||| ||||| ||||||| | || || | ||||||||||| |||||||| |
|
|
| T |
13086218 |
gcaatgggaaggatgaaacaaatatggggtaaggatcgcttcgaatttaagcccgagagatg |
13086157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 273
Target Start/End: Complemental strand, 13214314 - 13214132
Alignment:
| Q |
91 |
gtaaaagccctaaagaaagaaggacatggaaagggagaaatcagtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaa |
190 |
Q |
| |
|
|||||||| |||| ||| |||||| ||||||||| ||||| |||||||||||||||||||| ||| | ||| | | || || |||||||| || |
|
|
| T |
13214314 |
gtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagacaatgcgatcactctctttttagcaggaaatggcccag |
13214215 |
T |
|
| Q |
191 |
ttagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagat |
273 |
Q |
| |
|
|| |||||| ||||| ||||| |||||||||| |||||||| ||| ||||||||||| ||||| |||||||| || |||||| |
|
|
| T |
13214214 |
ttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat |
13214132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 12963692 - 12963791
Alignment:
| Q |
178 |
ggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt |
277 |
Q |
| |
|
|||| ||||||| ||||||||| ||| ||||||| || |||||| |||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
12963692 |
ggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaagagattaaagataatt |
12963791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 278
Target Start/End: Original strand, 13064952 - 13065097
Alignment:
| Q |
133 |
agtgagaagtatcttagagacactgcacttactatgatatttgccggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaactt |
232 |
Q |
| |
|
||||||||||||||||||||||||||| | | | | | || || ||||| || ||| ||||||||| ||||||||||| || |||||| ||||| | |
|
|
| T |
13064952 |
agtgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgtc |
13065051 |
T |
|
| Q |
233 |
atcctattgtggaagaaaaaatcattcaagagatcaaagataattg |
278 |
Q |
| |
|
||||| ||||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
13065052 |
atcctgttgtggaagccaagattattcaagagatgaaagataattg |
13065097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 278
Target Start/End: Original strand, 13080641 - 13080746
Alignment:
| Q |
173 |
ttgccggaaatggaacaattagttcagctctcagttggtatttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaaga |
272 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||| ||||| ||| ||||| ||||||| |||||| || || | ||||| ||||||||||||||||| |
|
|
| T |
13080641 |
ttgcaggaaatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaaga |
13080740 |
T |
|
| Q |
273 |
taattg |
278 |
Q |
| |
|
|||||| |
|
|
| T |
13080741 |
taattg |
13080746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 13010826 - 13010797
Alignment:
| Q |
1 |
cgattcttgtatgaaagtataacattttcc |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13010826 |
cgattcttgtatgaaagtataacattttcc |
13010797 |
T |
|
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 36668368 - 36668314
Alignment:
| Q |
343 |
catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata |
397 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
36668368 |
catggagctttatgtgaagccttaaggctttatccaccaataccttttgagcata |
36668314 |
T |
|
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 31396459 - 31396557
Alignment:
| Q |
178 |
ggaaatggaacaattagttcagctctcagttggtatttctggctt-ctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataa |
275 |
Q |
| |
|
|||||||| |||||||||||| |||| |||||| |||||||||| |||||||| |||||| |||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
31396459 |
ggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaagataa |
31396557 |
T |
|
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 397
Target Start/End: Complemental strand, 12164516 - 12164462
Alignment:
| Q |
343 |
catggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcata |
397 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
12164516 |
catggagctttatgtgaagccttgaggctttatccgccgataccttttgagcata |
12164462 |
T |
|
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