View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16232_low_7 (Length: 525)
Name: NF16232_low_7
Description: NF16232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16232_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 9300570 - 9300089
Alignment:
| Q |
1 |
cttgcagttggtgaaaccctttagccactaaacgtgcattgagcctattgacgccatcaacattttctttgactctgaatacccatttgcatcctatata |
100 |
Q |
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| T |
9300570 |
cttgcagttggtgaaaccctttagccactaaacgtgcattgagcctattgactccatcaacattttctttgactctgaatacccatttgcatcctatata |
9300471 |
T |
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| Q |
101 |
tggcggttctttttgttgggagagaaacccaatcccaagtgttatttctttctaatgaatcaaactcttcttgcatagtagcatgcccttggggggttat |
200 |
Q |
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| T |
9300470 |
tggcggttctttttgttgggagagaaaccccatctcaagtgttatttctttctaatgaatcaaactcttcttgcatagtagcatgccatt-ggggtttat |
9300372 |
T |
|
| Q |
201 |
agagtgcttgtttagcaattttagattcatagtaagtaacaaagtgggcttcagtctaggctgcacaatgccagacttggctctagtcctcataggatga |
300 |
Q |
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| T |
9300371 |
agagtgcttgtttagcaattttagattcatagtaaggaacaaagtgggcttcagtctaggctgcacaaagccagacttggctctagtcctcataggacga |
9300272 |
T |
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| Q |
301 |
tcattagtgagtctgtgttgcaaagtttagcattgataggaatatgagaggatgaatcaattgaagaggatgagccactactatctgggctggaaatttg |
400 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9300271 |
tcattagtgag------------------gcattgataggaatatgagaggatgaatcaattgaagaggatgagccactactatctgggctggaaatttg |
9300190 |
T |
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| Q |
401 |
gggttggaagttagttcaataataatttggtgcgggtggtcggtgatgcgccaaaataat-tttttggctagactagtgattagagggtaatccctagca |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9300189 |
gggttggaagttagttcaataataatttggtgcgggtggtcggtgatgcgccaaaataatatttttggctagactagtgattagagggtaatccctagca |
9300090 |
T |
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